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GENERAL STUDIES

Paper-I

For the Civil Services Preliminary Examination

General Science (Volume

IV)

Edgar Thorpe
Showick Thorpe

Copyright © 2016 Pearson India Education Services Pvt. Ltd

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1

Biology

the sCienCe of life

Biology is the study of life and living organisms. There are more than 10 million species of organisms alive on the Earth today, and many more that once lived are now extinct. Biology, as the science of life, uses scientific principles to study the living world. The great Greek philosopher Aristotle is considered to be the father of biology. In modern times, Jean Baptiste-de Lamarck, the French naturalist, was the first to use the word ‘biology’ in 1800.

The other important influence on the study of biology was that of the English zoologist Thomas Henry Huxley, who argued against the division of the subject into zoology and botany, and proposed that all living things should be studied in an integrated way. Since the beginning of the formal study of biology, its scope has continued to evolve, its subject areas have changed and reorganised. Biology today is subdivided into numerous branches based on the molecule, the cell, the organism and the population.

Major Fields of Biology

Anatomy: Study of internal structure of living beings. Bacteriology: Study of bacteria; Biochemistry: Chemical processes and substances occurring in living things; Biophysics: Applies tools and techniques of physics to the study of living things; Botany: Study of plants; Cryobiology: Analyses how extremely low temperatures affect living things; Cytology: Structure, composition and functions of cells; Ecology: Relationships between living things and environment; Embryology: Formation and development of plants and animals through fertilisation until they become independent organisms; Epidemioloy: Study of factors affecting the health and illness of populations; Entomology: Study of insects; Ethology: Animal behaviour under natural conditions; Genetics: The study of gene and inheritance; Evolutionary biology: Study of evolution of organisms; Histology: Study of tissues; Ichthyology: Study of fish; Immunology: Study of body’s defence mechanism against diseases and foreign substances; Limnology: Bodies of fresh water and the organisms found in them; Marine biology: Investigates sea life; Medicine: Science and art of healing; Microbiology: Study of microscopic organisms; Molecularbiology: Analyses molecular processes in cells; Mycology: Study of Fungi; Neurobiology: Studies the nervous system of animals; Phycology: Study of Algae; Ornithology: Study of birds; Palaeontology: Study of fossils; Pathology:

Examines the changes in body leading to disease or the changes caused by disease; Physiology: Functions of living things; Sociobiology: Focuses on biological basis for social behaviour in human beings and other animals; Taxonomy (or systematics): Scientific classification of plants and animals; Virology: Deals with viruses and viral diseases; Zoology: Study of animals.

Zoology

The study that deals with the animal kingdom (Animalia) is called zoology. Animals, for a long period, were simply classified as any living organism and could be even included in the plant kingdom. However, today they are considered to be those organisms that cannot be classified under any of the other three kingdoms, the Monera, Protista or Fungi.

Botany

Botany, as the field of science, is the study of plants. The definition, however, is not completely inclusive. For, botany is one of the three fields into which broader life science of biology is divided, the other two being microbiology and zoology. Biology recognises five kingdoms of life: Monera (bacteria and blue–green algae), Protista (one-celled organisms), Fungi, Plants and Animals. Of the five kingdoms, botany generally considers monerans, protists (that contain chlorophyll), fungi and plants as its subject matters.

origin of life

The Earth’s atmosphere contains an appropriate amalgam of vital elements like hydrogen, oxygen, carbon and nitrogen, which allows the creation and sustenance of life. Scientists believe that millions of years ago, the energy released due to heat, lightning or radioactive elements led to the formation of complex proteins and nucleic acids into strands of replicating genetic code. Subsequently, these molecules organised themselves to form the first simple forms of life, which were similar to what we call cyanobacteria today. These cellular forms are known as prokaryotes. Prokaryotic cells are very simple (without nucleus). The more complex cells of animals and plants are known as eukaryotes (they include membranebound nucleus). Later, the eukaryotic cells began to organise

themselves into multicellular organisms. The sidebar describes the approximate time of origin of the Earth’s major groups of plants and animals.

Organism Group Time of Origin

Marine invertebrates

Fish

570 million years ago

505 million years ago

Land plants 438 million years ago

Amphibians 408 million years ago

Reptiles

Mammals

320 million years ago

208 million years ago

Flowering plants 140 million years ago

Hominid line 20–15 million years ago

Table 1.1 Characteristics of Living and Non-Living Organisms

Characteristics living Organisms

liVing And non-liVing orgAnisms

Living organisms can extract, convert and use the energy from the environment. In addition, a living organism is able to maintain and even increase its own energy content. In contrast, dead organic matter tends to disintegrate as a result of the chemical and physical forces of the environment. In order to maintain themselves and prevent such disintegration, living organisms have an inbuilt selfregulating system to ensure that there is no net energy loss. This control is referred to as homeostasis and operates at all levels of biological organisation, from the molecular level to the community level. (Refer to Table 1.1 for differences between living and non-living organisms.)

Metabolism Cells transform energy while maintaining their identity and reproduce through metabolism.

Growth Grow from within, using food obtained from nutrition. The molecules are formed into new living material.

Reproduction Life span is limited but organisms have an ability to perpetuate life. The offsprings have the same general characteristics as of their parents. Nucleic acids (DNA, RNA), containing the coded information, are passed on to the next generation.

Nutrition Need food and other material for life processes. Light and chemical energy are the only two energy sources.

Respiration Energy is released during the breakdown of energy-rich compounds, the process known as respiration. This energy is stored up in molecules of adenosine triphosphate (ATP), known as ‘universal energy carrier’, present in all living cells.

Organisation Occur in definite shapes, sizes and possess inherited physical and chemical composition. The whole organism can be brought down to organs, tissues and cells.

Adaptation and responsiveness

Have the ability to respond to changes in both internal and external environments, therefore, survival chances are maximum. The change may be chemical, such as presence of acids and bases; physical, heat or light; mechanical, a contact or a blow. The responsiveness to such changes brings about structural, physiological or behavioural changes in animals or plants. Permanent adaptation, however, may occur over generations.

Movement Some organisms are mobile. They move from place to place, as animals or some bacteria, in search of food or for survival. Plants, unlike mobile organisms, manufacture their own food from raw material obtained in one place. However, some movement can occur in plants as well, such as the growth of a leaf towards the sun or a flower closing at night.

Excretion

Excretion is removal of waste products from the body that are left after metabolism. Example: Excess proteins cannot be stored in animals and must be broken down and expelled.

Non-living Organisms

No metabolism done.

Non-living objects, such as a crystal or a stalagmite, grow by addition of new material to their outside surface.

Can be broken down into new or similar objects, but cannot produce products that can grow to a similar size or shape as their own.

Do not require energy for their survival. If, however, some input is added to the object, it may lose its original identity.

No inbuilt mechanism is available for the, generation, consumption and storage of energy.

Such complex organisation is not present here. Example: Water (H2O) can be found in various physical forms such as a dew drop, ice, vapour or vast ocean.

Changes, physical or chemical, are bound to destruct the inanimate object, either in shape, size or composition.

Inanimate objects move under the influence of physical or chemical forces. Movement of plants is due to gravitational and centrifugal forces. Inanimate objects cannot move on their own.

No metabolism or nutritional intake, therefore, no excretion takes place.

(a) Archaea These are a group of organisms that can live in extremely hostile habitats like thermal volcanic vents, saline pools and hot springs. Like bacteria, archaea are single-celled organisms. The two may appear to be similar but both are biochemically and genetically very different. They are sometimes referred to as archaebacteria.

(b) Prokaryota The organism consisting of prokaryotic type of cell are called prokaryota. For example bacteria, they generally lack chlorophyll (cyanobacteria are an exception). They have a prokaryote cell type. It is through the breakdown of organic matter, that is through fermentation and respiration, that bacteria derive energy to sustain themselves. They also help in maintenance of nitrogen in the atmosphere (Rhizobium spp. and cyanobacteria). Without them the level of nitrogen in the ecosystems would fall, and the plant and animal growth

would be severely hampered. The oldest fossils of life on Earth are bacteria-like organisms.

(c) Eukaryota All organisms with a eukaryote cell type are termed eukaryota. Included in this group are the kingdoms Protista, Fungi, Animalia and Plantae.

(d) Viruses These are fragments of DNA or RNA, which depend for reproduction on the host cell that they infect. They are not cells but are thought to be parts of the genetic code that originated from eukaryote or prokaryote cells, the code fragments containing enough genetic information for self-existence. Viruses lack enzymes necessary for the generation of energy. Viruses can be cultured in any synthetic medium and are transmitted from one organism to another by biological vectors only. The viruses, at times, are metabolically inert and technically non-living but can cause several diseases in eukaryote organisms. In humans, they can cause smallpox, chicken pox, influenza, shingles, herpes, polio, ebola, AIDS, rabies and some types of cancer.

ClAssifiCAtion

As we now know that there is enormous variety of living organisms. Biologists put them into groups, or classify them, according to their structure and function. Each group reflects similarities that have come about because the organisms in the group are related through their common ancestry. In other words, they are descended from the same ancestors by the process of evolution. The major groups of organisms are plants, animals, fungi, protista, bacteria and viruses.

linnAeus system of ClAssifiCAtion

Classification is grouping things together on the basis of certain features, and the science of classification is called taxonomy. Taxonomy has two branches—nomenclature (the naming of the organisms) and systematics (the placing of organisms together).

In 1753, Carl Linnaeus (1707–1778), a Swedish naturalist, proposed an order-based system for the classification of the various organisms found on Earth. In that system of classification, which was based on binomial system, the finest unit of organisation of life is the species. Every organism, according to that system, could be classified with a unique binomial name. Each organism would have a generic name or the Genus (upper-cased first letter) followed by the specific name or the species (all letters lower cased) For example, the biological term

for humans is Homo sapiens. Here the genus is Homo and the species is sapiens. The term can be abbreviated as H. sapiens too. The Latin names are internationally agreed upon and avoid the confusion of local variations in common names.

Classi cation of Humans

It was Carolus (Carl) Linnaeus who classified humans as animals. According to him, humans along with monkeys and apes belonged to the taxonomic order Anthropomorpha, which he later renamed Primates. Linnaeus also recognised all humans as belonging to a common genus (Homo) and species (sapiens). In later editions of his book Systema Naturae, Linnaeus divided humans into four main sub-species: Homo sapiens americanus (Americans), Homo sapiens europaeus (Europeans), Homo sapiens asiaticus (Asians) and Homo sapiens afer (Africans). He, however, did not provide any systematic method for determining these divisions. Besides, he identified two other sub-species: Homo sapiens monstrosus (people with deformities, mythological giants and Hottentots of southern Africa) and Homo sapiens ferus (wild children found abandoned in forests). Interestingly, these taxonomic divisions in certain aspects later resembled racial characterisation. As he identified the Asian subspecies as melancholy, stiff and greedy, he chose to describe their European counterparts as gentle, optimistic and inventive. Therefore, it may be analysed that Linnaeus’s classification of humans was not based on scientific evidence and reflected his own European social prejudices.

modern ClAssifiCAtion systems

Linnaeus’ hypothesis served as the basis for the current classification systems. The modern classification systems comprise several levels of hierarchical organisation, which makes it more complicated. Structurally based on Darwin’s theory of evolution, these systems are taxonomic (answering structural and physiological connections between organisms) and phylogenic (classifications based on genetic connections between organisms). The modern classifications are standardised in a hierarchical system that go from general to specific.

other imPortAnt tyPes of ClAssifiCAtions

ArtifiCiAl ClAssifiCAtion Usually designed for practical purpose with an emphasis on convenience and simplicity, this category is based on one or a few easily observed characteristics.

Table 1.2 Linnaeus Classification

Classification Frog Dog Man

Phylum Chordata Chordata Chordata

Sub-phylum Vertebrata Vertebrata Vertebrata

Class Amphibia Mammalae Mammalae

Order Anura Carnivora Primate

Family Ranidae Canidae Hominidae

Genus Rana Canis Homo

Species Pipiens Familiaris Sapiens

nAturAl ClAssifiCAtion It considers more evidence than artificial classification, including internal as well as external features, and tries to use natural relationships between organisms.

Antibiotics

Antibiotics (Greek anti ‘against’, bios ‘life’) are chemical compounds used to kill or inhibit the growth of infectious organisms. Antibiotic refers to antibacterials, but as the term is loosely defined, these compounds are preferably specified as being antimalarials, antivirals or antiprotozoals. All antibiotics share the property of selective toxicity: more toxic to an invading organism than they are to an animal or human host. Penicillin is the most well-known antibiotic and has been used to fight diseases like syphilis, gonorrhoeae, tetanus and scarlet fever. Then, streptomycin has been used to combat tuberculosis. In the nineteenth century, French chemist Louis Pasteur became the maiden observer to discover that certain saprophytic bacteria could kill anthrax bacilli.

PhylogenetiC ClAssifiCAtion Based on evolutionary relationships, this system proposes that organisms belonging to the same groups have common ancestors. The phylogeny (evolutionary history) of a group can be shown by means of a family tree. Cladistics , a form of phylogenetic classification, is the most popular method for the classification of organisms.

PhenetiC ClAssifiCAtion If there is little or no fossil evidence, it can be difficult and even controversial, to establish evolutionary relationships. Phenetic classification, therefore, relies solely on observable characteristics, all of which are considered equally important.

numeriCAl tAxonomy It is a form of computer-assisted taxonomy.

the fiVe Kingdoms

Conventionally, all living organisms were classified under plant and animal kingdoms. Certain unicellular organisms like bacteria and fungi were earlier classified under the plant kingdom, but over the last few decades taxonomists have opposed this. As a result, there have been constant endeavours to reorganise the system of classification. Accordingly in 1969, R. H. Whittaker classified all living organisms into five main kingdoms: Monera (true-bacteria, blue–green algae), Protista (golden algae, yellow-green algae), Fungi (slime moulds, bread moulds, sac fungi), Plantae (plants) and Animalia (animals).

Bacteria in Disease

The role of bacteria in a disease (anthrax) was first proved by German bacteriologist Robert Koch in 1876 and was confirmed by Louis Pasteur. Koch meticulously developed techniques, used today in culturing bacteria, for study and set down rules still used for proving that a given infection is caused by particular bacteria, the pathogenic bacteria. These rules, called Koch’s postulates may be summarised as: The bacteria must be present in the infected tissue in every case of the infection; they must be isolated in pure culture on an artificial medium; inoculation of this culture into experimental animals must cause a similar disease and the organisms must be recovered from the infected tissue. About 10 years before Koch isolated anthrax, Joseph Lister virtually eliminated wound infections by soaking bandages in carbolic acid. This was the start of modern aseptic surgical techniques. Following Koch’s initial discovery, medical scientists raced to identify other pathogens. Pasteur, however, devoted himself to developing vaccines, materials made from specially treated organisms and inoculated into humans and other animals to develop immunity to a specific infectious disease. Studies of the response of the body’s defence mechanisms to bacteria later gave rise to the field of immunology. Immunology is, thus, inseparable from bacteriology, although, strictly speaking, it is a branch of medicine.

Table 1.3 Red Maple: Classification

Category Name Characteristics

Kingdom Plantae Organisms with rigid cell walls and those that possess chlorophyll

Sub-kingdom Embryophyta Plants forming embryos

Phylum Tracheophyta Vascular plants

Sub-phylum Pterophytina Large, conspicuous leaves, complex vascular system

Class Angiospermae Flowering plants, seed enclosed in ovary

Sub-class Dicotyledoneae Embryo with two seed leaves

Order Sapindales Soapberry order consisting of a number of trees and shrubs

Family Aceraceae Maple family

Genus Acer Maples and box elder

Species Rubrum Red Maple

Prokaryotes and Eukaryotes

All cellular organisms, as per Margulis and Schwartz, fall into the groups of Prokaryotes and Eukaryotes. In prokaryotes (‘pro’ before, ‘karyon’ nucleus), the DNA is not enclosed by nuclear membranes, but lies free in the cytoplasm. Therefore, the cell lacks true nuclei. The cells of eukaryotes (‘eu’ true), however, contain nuclei. Figure 1.1(a) shows some of the chief characteristics of all kingdoms and a five kingdom classification of living organisms. Viruses (as shown) have a very simple non-cellular structure and cannot exist independently of other organisms. Thus, they do not fit neatly into any classification. The eukaryotes have evolved from prokaryotes. Figure 1.1(b) shows the evolutionary relationships between the five kingdoms.

Prokaryotae

Prokaryotes! Bacteria and cyanobacteria (blue green bacteria), autotrophic or heterotrophic, motile or non-motile (Monera)

Eukaryotae

Protista Fungi

Organisms resembling the ancestors of plants, animals and fungi; include algae, protozoa, slime moulds Oomycodes (early fungi)

Predominantly unicellular

Photosynthetic bacteria

Prokaryotae (Monera)

Unicellular

1.1 Classification of Living Organisms

Heterotrophic, non-motile, food is digested outside the body and products of digestion absorbed

Photosynthetic Algae

Vi ruses (non-cellular)

Plants, autotrophic, non-motile Animals heterotrophic, motile, food is ingested (taken into the body) before digestion

Predominantly multicellular and derived from Protista (Protoctista)

Eukaryotes

Fungi

Multicellular

Living Organisms (a)
(b)
Plantae Animalia
Protista
Plantae
Animalia
FIG.

Classes: Pisces

1.2 Example of Hierarchy of Taxonomic Groups

Table 1.4 Major Difference between Prokaryotes and Eukaryotes

Feature Prokaryotes

Organisms Bacteria

Kingdom Monera

Form Mainly unicellular

Cell size

Average diameter: 0.5–10 µm

Cell division Mostly binary fission; no spindle

DNA location DNA is circular; lies free in cytoplasm (no true nucleus)

DNA form DNA is naked (not associated with proteins or RNA to form chromosomes)

Cell walls Rigid and contain polysaccharides with amino acids; murein is the main strengthening compound

Respiration Mesosomes in bacteria, except cytoplasmic membrane in blue-green

Photosynthesis No chloroplast; takes place on membranes that show no stacking

Nitrogen fixation

Some have the ability

Evolutionary origin 3.5 thousand million years ago

Organisms Bacteria

Kingdom Monera

Form Mainly unicellular

eukaryotes

Protista, fungi, plants and animals

Protista, Fungi, Plantae, Animalia

Mainly multicellular (except protista, many of which are unicellular)

10–100 µm; commonly 1,000–10,000 times bigger than prokaryotes cells

Mitosis, meiosis, or both; spindle form

DNA is linear; contained in a nucleus

DNA is associated with proteins and RNA to form chromosomes

Cell walls of green plants and fungi rigid and contain polysaccharides; cellulose is the main strengthening compound of plant walls and chitin (a polymer of N-acetylglucosamine residues) in fungal walls (none in animal cells)

Mitochondria for aerobic respiration

Chloroplasts containing membranes, which are usually stacked into lamellae or grana

None have the ability

1.2 thousand million years ago; evolved from prokaryotes

Protista, fungi, plants and animals

Protista, Fungi, Plantae, Animalia

Mainly multicellular (except protista, many of which are unicellular)

FIG.

Feature Prokaryotes

Cell size Average diameter: 0.5–10 µm

Cell division Mostly binary fission; no spindle

eukaryotes

10–100 µm; commonly 1,000–10,000 times bigger than prokaryotes cells

Mitosis, meiosis, or both; spindle form DNA location DNA is circular; lies free in cytoplasm (no true nucleus)

DNA is linear; contained in a nucleus DNA form DNA is naked (not associated with proteins or RNA to form chromosomes)

Cell walls Rigid and contain polysaccharides with amino acids; murein is the main strengthening compound

Lately, DNA and RNA sequence analysis demonstrated that there actually are two major groups of prokaryotes: the Bacteria and Archaea.

Bacteria

Having appeared about 3,500 million years ago, bacteria is one of the oldest and smallest group of organisms with cellular length ranging from 0.1 to 10 mm and possessing an average diameter of about 1 mm. Found in soil, dust, water, air, in and on plants and animals, most bacteria are enclosed by a tough protective layer called cell wall. Some species are enclosed by a capsule, a slimy layer making the wall resistant to destructive chemicals. All bacteria have a cell membrane, an elastic bag-like structure just inside the cell wall. Small molecules of food enter the cell through pores in this membrane, but larger molecules cannot pass through. Inside the membrane is cytoplasm, a jelly-like substance containing chemicals called enzymes, required for food breakdown and building cell parts. These cells also contain DNA, vital for growth, reproduction and other activities. It forms an area of the cytoplasm called nuclear body. Other parts of bacteria’s cell structure are mesosomes—unfoldings of cell surface membrane; ribosomes—sites for protein synthesis; pilus—numerous fine protein rods concerned with attachment to specific cells or surfaces; plasmids—small, self-replicating circles of extra DNA, processing a few genes that give extra survival and flagellum—the tail-like structure enabling movement of bacteria cells.

DNA is associated with proteins and RNA to form chromosomes

Cell walls of green plants and fungi are rigid and contain cellulose, which is the main strengthening compound of plant walls, and chitin in fungal walls (none in animal cells)

Chlamydia

The bacteria that cause various infectious diseases in humans and animals are called Chlamydia. It has three sub-species: Chlamydia trachomatis, Chlamydia pneumoniae and Chlamydia psittaci. The diseases caused by the trachomatis species perhaps are the most common chlamydia illnesses. One strain of C. trachomatis causes conjunctivitis, an eye infection marked by redness and swelling, sensitivity to light and pus discharge. A strain of fly borne C. trachomatis causes a severe form of conjunctivitis called trachoma.

historiCAl deVeloPment in BACteriology Bacteriology, the study of bacteria, is an important branch of microbiology. Dutch microscope-maker Antoni Van Leeuwenhoek was the first person who systematically studied bacteria in the seventeenth century. His work set the stage for later researchers including French biologist Louis Pasteur who showed that microbes did not arise from non-living matter and German scientist Robert Koch, who highlighted the fact that bacteria could cause diseases. In the nineteenth century, Russian soil scientist Sergi Winogradsky described important energy-yielding metabolic reactions in bacteria and discovered many anaerobic micro-organisms. But it was in the 1940s that American scientist Selmen Waksman discovered a wide range of soil bacteria that produce antibiotics. Bacteria were till then, else for photosynthetic cyanobacteria (a group of algae), considered as microscopic fungi (called Schizomycetes). The detailed study of its cell structure revealed that they consisted a fundamental group which was completely different from the other organisms. It was Copeland who gave them their own kingdom Mychota, in

the year 1956, which was later named Monera, Prokaryota or Bacteria. After a few years, in the 1960s, the idea was further defined and bacteria (which now include cyanobacteria) were identified as one of the two prime divisions of the living world, along with eukaryotes. It was believed that eukaryotes had evolved from bacteria and later from assemblies of bacteria.

Destruction of Bacteria

Most bacteria are usually destroyed at high temperature. The harmful species in milk can be killed by maintaining 62°C (143°F) temperature for 30 min, the process called as pasteurisation. However, flash pasteurisation is commonly in use nowadays where 71°C (160°F) temperature is maintained for 15 s. Most non-spore forming bacteria are destroyed by boiling water and can be killed by various disinfectants. Antiseptics, too, may be used to inhibit their growth. Among the most effective disinfectants are phenol (carbolic acid), chlorine gas (drinking water is treated with chlorine to render it safe), bichloride of mercury (and other mercury-containing compounds) and alcohol (in a 50–70 per cent solution). The above chemicals, however, are poisonous for humans if taken internally. Antibiotics, produced by living organisms (usually, bacteria and moulds), are used internally to control the growth of bacteria or destroying them; antimicrobial agents are natural or artificial chemicals having the same use.

Plasmids

Found in certain bacteria, plasmids are tiny pieces of DNA generally carrying non-essential bacterial genes. Some plasmids are resistant to antibiotics, the cause behind which remains yet to be known even as experts blame the overuse of antibiotics for the plasmids’ acquiring extra DNA-controlling resistance.

The advent of molecular synthesis, however, challenged this view. In 1977, Woese divided prokaryotes into two groups: Eubacteria and Archaebacteria. He argued each of these, along with eukaryotes, evolved separately, and in 1990, he emphasised on this by promoting them to domains, renamed as Bacteria, Archaea and Eucarya.

imPortAnCe of BACteriA

(a) Helpful bacteria Living in the intestines of human beings and animals, certain bacteria facilitate digestion and vitamin production. Bacteria found in soil and water plays an important role in the recycling of carbon, nitrogen, sulphur and other chemical elements used by living beings. Many of them help decompose dead organisms

Eubacteria and Archaea

Eubacteria (or true bacteria) and archaea (or archaebacteria) are two major groups differing mainly in basic genetic constitution and structures of some of their cellular components. Most eubacteria are harmless, or even beneficial, but some may cause diseases. They produce many of the antibiotics used in medicine. Escherichia coli, a common intestinal organism used in genetic engineering, is a eubacterium. Archaea or Archaebacteria are a group of one-celled organisms, many of which do not require oxygen or sunlight to live. Prior to their discovery, scientists divided all living organisms into prokaryotes (those lacking cellular nucleus), comprising, primarily bacteria and eukaryotes (organisms with a cellular nucleus) like fungi, plants and animals. Initially, archaea were grouped with bacteria, as they too lacked a well-defined nucleus. Spirochete bacteria, included within the kingdom Prokaryotae, are singlecelled organisms lacking a well-defined internal cellular organisation. The bacterium Leptospirilla ichterohemorrhagiae exhibits the spirochete or spiral structure characteristic of many of the 1,600 species of bacteria.

and animal waste into chemical elements while others help change chemical elements into forms usable by plants and animals. There are some nitrogen fixing bacteria which help in the nitrogen cycle by fixing atmospheric nitrogen present in soil and air. Bacteria also assists in fermentation, a chemical process by which alcoholic beverages, cheese, etc., are prepared. Sewage treatment plants use them to purify water while they also find their use in manufacturing of drugs.

(b) Harmful bacteria Only a small fraction of the thousands of bacteria species cause diseases in humans, by destroying healthy cells and preventing the body from functioning properly. While bacterial infection can be prevented by killing them at a certain temperature (as in sterilisation and pasteurisation), still if it does occur antibiotics may be used. However, overuse of antibiotics in recent years has enabled the development of strains of bacteria that are resistant to antibiotics, such as Mycobacterium tuberculosis, which causes tuberculosis. A list of bacterial diseases in humans is given below:

Use of Bacteria in Bio-Tiolets

The Indian Railways has used Bacteria in the Bio-Toilets fitted in new coaches. Railways has set the target to fit 17,000 bio-toilets in long-distance trains as part of its ‘Swachh Rail –Swachh Bharat’ programme, to be implemented in fiscal 2015–16. The bio-toilets are fitted underneath the lavatories and the human waste discharged into them is acted upon by a particular kind of bacteria. The bacteria convert it into noncorrosive neutral water.

Table 1.5

Type

List of Bacterial Diseases in Humans

bacterium

Bacillus Bacillus anthracis

Bacillus cereus

Clostridium botulinum

Bacillus Clostridium perfringens

Clostridium tetani

Corynebacteriumdiphtheriae

Escherichia coli

Klebsiellapneumoniae

Legionella pneumophila

Mycobacterium leprae

Mycobacterium tuberculosis

Salmonella spp

Salmonella typhi

Salmonella typhimurium

Shigelladysenteriae

Shigella spp.

Yersinia enterocolitica

Yersinia pestis

Yersinia pseudotuberculosis

Chlamydia Chlamydia trachomatis

Coccobacillus Bordetella pertussis

Brucella spp

Hemophilusinfluenzae

Hemophilus pertussis

Coccus Neisseria gonorrhoeae

Neisseria meningitidis

Staphylococcus aureus

Streptococcus pneumoniae

Streptococcus pyogenes

Streptococcus spp

Listeria Listeria monocytogenes

Mycoplasma Mycoplasma pneumoniae

Rickettsia Rickettsia prowazekii

Rickettsia rickettsii

Rickettsia typhi

Spirillus Campylobacter fetusjejuni

Spirillum minor

Spirochete Treponemapallidum

Vibrio Aeromonashydrophila

Plesiomonasshigelloides

Vibrio cholerae 01

Vibrio cholerae non-01

Vibrio parahemolyticus

Vibrio vulnificus

Disease

Anthrax

B. cereus food poisoning

Botulism

Clostridialmyonecrosis (gas gangrene)

Tetanus (lockjaw)

Diphtheria

Diarrhea

Bronchopneumonia

Legionnaire’s disease

Leprosy

Tuberculosis

Salmonella

Typhoid fever

Salmonella gastroenteritis

Bacillary dysentery

Shigellosis

Yersiniosis, gastroenteritis

Plague

Senteric lymphadenitis

Trachoma, rethritis, cervicitis, conjunctivitis

Pertussis (whooping cough)

Undulant fever

Meningitis, bacterial pneumonia

Pertussis (whooping cough)

Gonorrhea, pelvic inflammatory disease

Meningitis

Pneumonia, toxic shock syndrome, skin infections, meningitis

Pneumonia, ear infections, meningitis

Strep throat, rheumatic fever

Scarlet fever, puerperal fever

Listeriosis, perinatal septicemia, meningitis, encephalitis, intrauterine infections

Pneumonia

Epidemic typhus Brill-Zinsser disease (spread by lice)

Rocky Mountain spotted fever (spread by ticks)

Endemic typhus (murine typhus, spread by rat fleas)

Campylobacteriosis(bacterial diarrheal illness)

Ratbite fever

Syphilis

Gastroenteritis, septicemia, cellulitis, wound infections, urinary tract infections

Gastroenteritis, diarrhea

Epidemic cholera

Gastroenteritis

V. parahemolyticus-associated gastroenteritis

Wound infections, gastroenteritis, primary septicemia

reProduCtion in BACteriA The reproduction in bacteria is asexual, through binary fission or simple cell division. Here, one cell divides into two daughter cells with the development of a transverse cell wall. Notably, events such as mutation (random genetic change within a cell’s own genetic code) may lead to genetic variations within individual cells. A like other complex organisms, bacteria, too, have mechanisms for exchanging genetic material; the resulting bacterium is a combination of traits from two different parental cells. By the amalgam of genetic material, bacteria develop new traits, including ability to withstand acidity and high temperature and acquire resistance to antibiotics. Three different modes of exchange have thus far been identified in bacteria:

(a) Transformation Transfer of naked DNA from one bacterial cell to another in solution (this can include dead bacteria).

(b) Transductio n Transfer of viral, bacterial, or both bacterial and viral DNA from one cell to another via bacteriophage.

(c) Bacterial conjugation Transfer of DNA from one bacterial cell to another via a special protein structure called a conjugation pilus.

Symbiosis (Greek symbioum, ‘to live together’) looks into the interdependence of different species, which are sometimes called symbionts. The symbiosis resulting in mutual benefits to interdependent organisms is called mutualism. Example: Rhizobium, a nitrogen-fixer living in the root nodules of legumes such as pea and clover. Parasitism is a kind of relationship between organisms of different species in which one (the parasite) benefits from a prolonged, close association with the other (the host), which is harmed. In general, parasites are much smaller than their hosts, show a high degree of specialisation for their mode of life and reproduce more quickly and

in greater numbers than their hosts. Parasites that cause disease are called pathogens Commensalism, another type of symbiosis, defines the association between two different kinds of non-parasitic animals, called commensals. It is harmless to both and beneficial to one of the two organisms. The association of colour bacteria with humans and other animals, especially plant-eaters, is also a type of commensalism.

After acquiring DNA from any of these events, bacteria can undergo fission and pass the recombined genome to new progeny cells. Many bacteria harbour plasmids that contain extrachromosomal DNA. Under favourable conditions, bacteria may form aggregates visible to naked eyes, such as bacterial mats

nutrition in BACteriA The species that feed on other organisms are heterotrophic bacteria while those manufacturing food themselves are autotrophic bacteria Then, certain bacteria have the traits of both autotrophic and heterotrophic, depending upon the food available. A majority of the heterotrophic bacteria feed on dead organisms, the species called as saprotroph, which along with fungi constitute the decomposers and are essential in bringing about decay and recycling of nutrients. Bacteria that use light to synthesise their organic requirements are called phototrophs and those that use chemical energy are called chemotrophs

Cyanobacteria

Cyanobacteria (or blue–green algae) is a photosynthetic bacteria containing chlorophyll. Classified under plant kingdom earlier, discoveries through electronic microscope and new biochemical techniques, however, showed them to

Cell wall

Single circular DNA molecule becomes attached to mesosome

Two identical daughter cells formed

Cell surface membrane

Point of attachment of DNA to cell surface membrane: this is sometimes a mesosomes

DNA starts to replicate in both directions as indicated by small arrow inside the cell

DNA replication complete and second DNA molecule becomes attached to mesosome

Growth of new cell wall (shown as black) and membrane separate the DNA molecules

New cell wall and membrane grow between DNA molecule
FIG. 1.4 Binary Fission in a Bacterium, E. coli

be prokaryotes, more similar to bacteria than plants. Now, they are placed under kingdom Monera. Cyanobacteria are familiar to many as a component of pond scum. Nitrogen-fixing cyanobacteria only require nitrogen and carbon dioxide to survive. They use two photosystems, which split water and yield oxygen; lack flagella; can be single, colonial or multicellular; are usually present in water that has been polluted, often with phosphates and nitrates and often explode in ‘algal blooms’.

Viruses

Viruses are the smallest living organisms, but without a cellular structure. They have a simple structure, consisting of a small piece of nucleic acid, either DNA or RNA, surrounded by a protein or lipoprotein coat. They can reproduce by invading living cells, therefore, are all parasitic. While outside a host cell they are inert, inside they enter a dynamic phase in which they replicate, pirating the host cell’s enzymes, nucleic and amino acids and machinery to accomplish what they are not equipped to do alone. Viral replication is often carried out at the expense of the host. Diseases such as herpes, rabies, influenza, some cancers, poliomyelitis and yellow fever are of viral origin. Although there are millions of different types of virus, approximately 250 cause diseases (over 100 of which cause the common cold) and 100 infect animals.

Unconventional Viruses

Viroids: Consisting solely of a small, circular molecule of RNA, viroids are particles known to cause diseases in plants such as potato, tomato, cucumber, avocado, coconut and chrysanthemum. Cadang-cadang (a viroid disease) has severely affected the coconut palm industry.

Prions: Prions, the infectious agents that cause a slew of degenerative neurological diseases, including scrapie in goats and sheep, and kuru and Creutzfeldt-Jakob in humans, attach themselves to the normal form of the protein, thereby causing a change in its shape to the disease-causing form. So far, prions are identified as a form of protein, sans the nucleic acid.

Discovery of Viruses

It was in 1898 that Beijerink, a Dutchman, for the first time described the infectious nature of certain plant fluids as ‘virus’. Later, viruses were found to be the smallest living organisms, their size ranging from 20 to 300 nm, and about 50 times smaller than bacteria. They cannot be seen with a light microscope and pass through filters that retain bacteria.

Structure of Viruses

The structure of viruses comprises:

(a) Core The genetic material, either DNA or RNA, which may be single stranded or double stranded.

(b) Capsid A protective coat of protein surrounding the core.

(c) Nucleocapsid The combined structure formed by the core and capsid.

(d) Envelope A few viruses, such as HIV and influenza viruses, have an additional lipoprotein layer around the capsid, derived from the cell surface membrane of the host cell.

(e) Capsomers Capsids are often built up of identical repeating subunits called capsomers.

Life Cycle of a Virus

The life cycle is, in principle, the same for all phages Phages or bacteriophages are a group of viruses that attack bacteria. While some phages complete life cycle without a break (the process called lytic cycles), others (like lamdaphage) insert their DNA into that of the host and remain dormant over several generations. Each time the host cell divides the phage, DNA is copied with the host cell DNA. This dormant stage of the phage is called the prophage Eventually, it is activated again and completes its life cycle, causing death of the host cell in the usual way. Such phages are described as lysogenic.

The AIDS Virus

AIDS is caused by HIV, which primarily attacks T4 lymphocytes, an important part of the human immune system. As a result, the body’s ability to resist opportunistic bacterial, viral, fungal, protozoal and other infection weakens considerably. The virus is transmitted sexually, through contact with contaminated blood, tissue or needles and from mother to child during pregnancy or breast feeding. Full-blown symptoms of AIDS may not develop even for over 10 years after infection. Pneumocystis carinii pneumonia is a leading cause of death among people with HIV infection. But, incidence of other kinds of cancers such as B-cell lymphomas and Laposi’s sarcoma is also seen. Neurological complications and dramatic weight loss are characteristics of AIDS.

The Nature of HIV Virus

HIV is an RNA retrovirus, which when viewed under an electron microscope shows a dense cylindrical core that encases two molecules of viral RNA genetic material. The core is surrounded by a spherical outer envelope. HIV contains reverse transcriptase, a special enzyme, which has the ability to make a DNA copy of the viral RNA. This enables the virus to reverse the normal flow of genetic information and to incorporate its viral genes into the genetic material of its host. The virus may then remain in a latent form for a lengthy period until it is reactivated. A critical step in HIV infection is binding of the virus to the receptor of the cell it attacks, thereby enabling its entrance. A molecule called CD4, found on the surface of the T4 cell, serves as the receptor and almost any other cell with CD4 surface molecule can become infected with HIV.

Bacteriophages (or Phages)

Viruses that attack bacteria form a group called bacteriophages, or simply phages. Some of these have a distinct icosahedral head, with a tail showing helical symmetry. (T2 phage with envelope, single-stranded DNA, bacterium-infected, with icosahedral head and helical tail. Its tail fibres released prior to infection.)

Kingdom ProtistA

Kingdom Protista consists of unicellular or colonial eukaryotes with diverse nutritional habits and reproduces, both sexually and asexually, through meiosis and nuclear fusion, respectively. Those interested in evolution find the group fascinating, as its organisms are the link between prokaryotes and the modern eukaryotes like plants and animals. A wide variety of protista organisms exist, inhabiting in different environments like freshwater, seawater, soils and intestines of animals (where they perform crucial digestive processes). Varying in size and shape, protista prepare their own food through photosynthesis, and like animals, move around by using their own energy. However, cells organised into specialised tissues, which are found in plants and animals, are missing here. While green algae Narochlorum is only 0.1 mm long, Giant Kelps can grow up to 65 m. Then, some protists can form structures known as spores, which are resistant to chemicals, heat and drought, and disperse in the

Algae in Protista

Kingdom Protista includes seven phyla of algae, depending on the classification system followed. They are photosynthetic organisms and can be differentiated on the basis of accessory photosynthetic pigments, presence of a cell wall and the composition of the cell wall, if present. Accessory pigments that mask the green of the chlorophyll are responsible for the characteristic colours of many phyla.

Phylum Myxophyta, the slime moulds, resemble algae, but they are multicellular or multinucleated in all or most of their life cycle. They reproduce asexually by means of spores.

environment. They are identified as the infectious stage of organisms, which cause diseases in humans when ingested.

Structure of Protists

Most protists contain membrane-bounded organelles (cellular parts) called mitochondria, which break down complex molecules and, in the process, release chemical energy that powers the rest of the cell. In addition to mitochondria and nuclei, membrane-bound organelles called plastids, which perform photosynthesis, are found in the protist cell structure. A majority of protists reproduce asexually—cells simply grow and divide. However, sexual recombination—production of gametes and the merging of DNA from two individuals to form a zygote—has also been observed in some protists.

Kingdom fungi

Kingdom Fungi comprises of numerous moulds that grow on damp organic matter (such as bread, leather, decaying vegetation and dead fish) and unicellular yeasts that are abundant on sugary surfaces of the ripe fruits and many parasite plants. Though botanists classified fungi in the plant kingdom, biologists later considered it as a separate kingdom. Most fungi can be seen through naked eye and its study is called mycology (‘mykes’ mushrooms). They are sub-divided on the basis of mycelium morphology and mode of nutrition and reproduction.

Fungi constitute of filamentous tubes called hyphae In several species, perforated walls or septa divide the hyphae into cells containing one or two nuclei. Protoplasm flows through the opening in the septa to provide cells with nutrients, which are stored in the hyphal walls as glycogen. Hyphae elongate from the tip. The entire mass of hyphae is collectively called mycelium

Characteristics of Fungi (Kingdom Fungi)

■ The absence of chlorophyll makes fungi non-photosynthetic; therefore, they resort to heterotrophic nutrition.

■ Can be mutualists, parasites or saprotrophs.

■ Digestion takes place outside the body and nutrients are absorbed directly.

■ Body is usually amycelium, a network of five tubular filaments called hyphae. These may be septate (have cross-walls, like Penicillium) or aseptate (no cross-walls, e.g. Mucor).

■ Rigid cell walls containing chitin as the fibrillar material. (Chitin is nitrogen-containing, polysaccharide, very similar in structure to cellulose with high tensile strength). It, therefore, gives shape to the hyphae and prevents osmotic bursting of cells.

■ If carbohydrate is stored, it is usually as glycogen and not starch. They reproduce by means of spores and are non-motile organisms.

Head
Collar
Sheath
Base plate

Mycorrhiza

Some mushrooms share a symbiotic relationship called mycorrhiza with higher plants. The fungal hyphae either penetrate into the root cells of certain trees or form a thick sheath

around the surface and outer cells of their rootlets, causing them to branch out and suppressing the normal development of root hairs. Such fungi obtain organic nutrients from the host plant and benefit it by providing certain needed chemicals, such as phosphate.

Mushroom Growth

The fruiting body of a soil-dwelling fungus is called mushroom. The fungus itself consists of a mycelium, which is a loose network of hyphae or fungal threads. When conditions are favourable, the hyphae form a dense, spherical mass that pushes up through the soil. Initially, the stalk and cap are joined by a thin and protective membrane but as the stalk grows the membrane ruptures to expose the spore-lined gills. Each mushroom releases millions of spores. The reproductive cycle in mushrooms is complex. They produce spores, which then undergo sexual reproduction under proper environmental conditions.

Mushrooms belong to phylum Basidiomycetes, named for the tiny, club-shaped structures called Basidia that these fungi use to produce spores. The basidia line the underside of a mushroom cap on their gills that radiate from mushroom’s centre.

(dikaryotic)

nuclei ( )n

Basidia (dikaryotic)

FERTILISATION ) (n+ n

Gills lined with basidia

nuclei (2 )n

n

Haploid basidiospores ( )n

Strain (–) (+) (+) Strain

Germination of basidiospores

Edible and Inedible Mushrooms

Though a wide range of mushrooms are edible, only a few species are delicious. Others, if edible, are tough or of unremarkable flavour. Some can produce varying degrees of illness while a species called toadstools are deadly poisonous. All species resemble so much that it is difficult for even expert mushroom gatherers to distinguish between edible and poisonous species. The most edible species include sponge mushrooms (or morels), inky caps and shaggymanes of genus Coprinus. Then, there are mushrooms that are hallucinogens, such as poisonous Amanita muscaria, species of Boletus and Psylocybe species, used for inducing hallucinations during ritual ceremonies by some groups of Native Americans.

Formation and release of basidiospores

Kingdom PlAntAe (PlAnt Kingdom)

Classification of Plant Kingdom

With about 2.5 lakh species of mosses, liverworts, ferns, flowers, bushes, trees and other plants, the Kingdom Plantae accounts for the largest proportion of the Earth’s biomass. Aquatic and terrestrial plants, which are the basis of all food webs, contribute life-supporting oxygen to the atmosphere and provide to the humans fossil fuels, medicines and other substances required for existence.

Basidiocarp
Haploid
Diploid
MEIOSIS
Basidium
(–)
Dikaryotic mycelium ) (n+

Plant Kingdom

Embryo Stage Absent

Algae

Green

Algae Algae Algae (Chlorophyta) (Phaeophyta) (Rhodophyta)

Vascular Tissues Absent

Brown Red (Hepatophyta) Mosses (Bryophyta)

Liverworts

Bryophytes

Hornworts (Anthocerophyta)

Lycopodophyta (Club Mosses)

AlgAe Algae are placed in kingdom Protista because of their occurrence in microscopic forms, but many of them have characteristics in common with plants, such as contain cell walls, green pigment chlorophyll and manufacture own food through photosynthesis. Chlorophyll may be masked by other pigments, giving various kinds of algae different colours. Some types are mobile (capable of moving about) and ingest organic food, though, they, too, may contain chlorophyll and conduct photosynthesis. While some surfaces are soft, other may be stony, coral-like or calcareous deposits and, therefore, many biologists place algae under Plant Kingdom as well. But in this book, Algae has been placed under kingdom Protista.

BryoPhytes Found mostly in moist places, bryophytes are simple, non-vascular small plants with thallus-like body, which remains attached to the soil by rhizoids. The mode of reproduction is mainly sexual and they lack roots, flowers and seeds. Bryophytes are embryo-bearing plants of three plant divisions: Bryophyta (mosses), Hepatophyta (liverwort) and

Mosses

Mosses, it was believed, evolved from algae, but biochemical evidence later showed them as an evolutionary offshoot from simple higher plants, separating from there somewhere around the Devonian

Embryo Stage Present

Vascular Tissues Present

Tracheophytes

Seed absent Pteridophytes

Arthophyta (Horsetails)

Ferns Pteriophyta

Seed naked Gymnosperms

Seed Present

Seed Inside Fruit Spermatophytes

Cycads Conifers Dicots Monocots Angiosperms

geological period. Falling in the class Musci, mosses have about 23,000 species. They are primitive plants and comprise the division Bryophyta of plant kingdom. By far the largest group of Bryophyta, mosses consist of three major subgroups: true mosses (Bryales), peat moss (Sphagnales) and granite mosses (Andreaeales).

Anthocerophyta (hornworts). In their level of organisation, bryophytes lie between chlorophyta (from which they are likely to be evolved) and simpler, lower vascular plants like the Lycopodophyta.

trACheoPhytes Found only on land, tracheophytes are a collective term applied to vascular plants of a division or phyla. The nine divisions can be divided into two main groups: pteridophytes and spermatophytes.

A. Pteridophytes (Lower Seedless Vascular Plant)

lyCoPodoPhytA Multicellular, terrestrial plants with vascular tissues, lycopodophyta’s body are differentiated into roots, stem and leaves. The spores are produced in the axils of fertile leaves, mostly aggregated into club-like terminal cones. Club mosses, spike mosses, quillworts are common examples.

ArthroPhytA Possessing upright stems that grow from underground branches, arthrophyta, too, are multicellular plants with vascular tissues. The plant body is divided into roots, stem and small whorled leaves. They are largely

FIG. 1. 5 Plant Kingdom

an extinct group, represented by a single living genus the Equisetum (the horsetails). Horsetails are conspicuously jointed rushes with spokes of short, pine-needle like leaves radiating from each joint. Found in wet, swampy soil, they occur in all land masses except Australia. The stem contains silica and is used for polishing wood.

PteroPhytA They contain spores for reproduction, which usually are produced on the lower surface of leaves or on their margins. Pterophyta also are multicellular plants with vascular tissues, their body differentiated into roots, stem and leaves. Here, seeds are not produced.

B. Spermatophytes

These plants have seeds and are divided as (i) Gymnosperm (Latin gymn ‘naked’ and Greek sperma ‘seed’) and (ii)  Angiosperm (Latin angi ‘enclosed’ and Greek sperma ‘seed’ meaning seed inside fruits).

gymnosPerm These are further divided into Cycadophyta These are multicellular terrestrial plants with vascular tissues (without vessels). The plant body is divided into root, stem and leaves. The stem is large and woody, leaves are large and fern-like. Example: Cycas (sago palm), Zamia (sago tree).

Coniferophyta Multicellular plants with welldeveloped tissues, the main plant body of coniferophyta is large and woody leaves are simple, smaller than cycodophyta and needle-like. Example: Cedrus (deodar) and Taxus (yew).

AngiosPerms (or AnthroPhytA) This category includes more advanced flowering plants with well-developed vascular tissues and makes up for more than half of all known species of plants—about 20,000. They are predominantly saprophytic, possess a well-differentiated body of roots, stem and leaves, and occur in almost all places. Angiosperms range vary in size from minute floating duckweeds to giant eucalyptus and silkcotton trees, and include plants of great variety and form— cacti, water lilies, sunflowers, orchids, pitcher plants, Indian pipe, etc. The reproductive organs of these plants are flowers and seeds are enclosed within an ovary, which develops into a fruit-wall. On the basis of age they are grouped as:

(a) Perennials—living for many years,

(b) Annuals—producing flowers and fruits in the course of a single season,

(c) Biennials—living for two seasons.

Angiosperms are broadly divided into two classes:

Dicotyledons Possessing two cotyledons (seed leaves that usually do not become foliage leaves but serve to provide food for the new seedling) in their seeds, these plants may be annuals, biennials or perennials. Example: Gram.

Monocotyledons Mostly annuals with a single cotyledon in their seeds, these plants do not have any secondary growth and their features include flower parts in threes: one cotyledon leaf veins (which are usually parallel) and vascular tissues (present in scattered bundles in the stem).

Other Classifications

(a) Terrestrial plants—grow on soil.

(b) Hydrophytes—grow in water.

(c) Epiphytes—perch on other plants, but do not take nourishment from them. They are not rooted in the soil but upon branches and stems of other plants. Example: Urn.

(d) Xerophytes—grow in dry habitats like deserts. Example: Cacti

(e) Mesophytes—thrive under conditions intermediate between very wet and very dry. A great variety of crops like beans, tomatoes, peas, etc., belong to this category.

(f) Parasitic—lack chlorophyll and, therefore, cannot prepare their own food.

(g) Carnivorous—trap insects and other small creatures on their sticky leaves and digest them to obtain nitrogen and other material essential for their growth. Example: Insectivorous plants like pitcher plant and bladderwort.

Kingdom AnimAliA (AnimAl Kingdom)

Kingdom Animalia has all animals as its members, but does not contain prokaryotes or protists. All members are multicellular and heterotrophs, relying directly or indirectly on other organisms for nourishment. Most ingest food and digest it in an internal cavity.

The rigid cell wall that characterises plant cells is absent here. The bodies of animals (except sponges) are made up of cells organised into tissues, each specialised to a certain extent to execute specific functions. As compared to plants and other organisms, most animals are capable of rapid movement. They reproduce sexually, by means of differentiated eggs and sperm are diploid, meaning cells of the adult contain two copies of genetic material. The development is characterised by distinctive stages, including zygote, formed by the first few divisions of fertilised cells, followed by a blastula, a hollow ball of cells formed by the developing zygote; and a gastrula, formed when blastula folds in on itself to form a double-walled structure with an opening to the outside, the blastopore.

While the exact number is yet to be known, about 10 million animal species are found on Earth. They may vary in size from no more than a few cells to organisms weighing several tonnes, such as blue whales and giant squids. Most animals inhabit the seas, with fewer in freshwater and even less on land.

Protozoa

Protozoa, the single-celled microscopic organisms, include flagellated Zoomastigina as its members, many of which live as parasites on plants and animals. All functions of protozoa are performed within the single cell itself. Examples: Amoeba, sarcodina. The protozoa, however, are placed in kingdom Protista with other single-celled

KINGDOM ANIMALAE

Protozoa

Sarcomastigophora

(Flagellates)

Phyla non- cordata

(INVERTEBRATES)

Sarcodia

Sporozoa (Spore-formers) (Sarcodina)

Ciliophora

Metazoa

Phyla non- cordata (VERTEBRATES) (Ciliates)

Porifera (sponges)

Cnidaria

Nemathelminthes

Annelida

Arthropoda

(INVERTEBRATES)

Calcarea

Hexactinellida

Demospongiara

Hydrozoa

Scyphozoa

Anthozoa

Turbellaria

Trematoda Cestoda

Polychaeta

Oligochaeta Hirudinia

Crustacea

Myriapoda Insecta

Arachrida

Monoplacophora

Amplineura

Hemichordata Urochordata Cephalochordata Vertebrata or (Craniata) (Branchiostoma) (Herdmania) (Balanogiossus)

Agnatha

Cyclostomata

Pisces

Placodermi Osteichthyes

Chondrichthyes (ANAMNIOTES)

Mollusca

Gastropoda

Pelecypoda

Cephalpoda

Asteroidea

Ophiuroidea

Echinodermata

Echinoidea

Holothuroidea

Crinoidea

organisms in many classifications. They can be classified as Sarcomastigophora (flagellates), Sarcodina (Sarcodines), Sporozoa (Spore-formers) and Ciliophora (Ciliates).

Metazoa

All animals, including humans, are placed under the metazoa sub-kingdom. They are multicellular organisms in which cells are grouped together to form tissues, organs and systems. Metazoas are divided into two main groups:

inVerteBrAtes (non-ChordAtA PhylA) Commonly called sponges, non-chordates do not possess a vertebral column; they lack a backbone and until now the most abundant

Grathostomata

Amphibia

Tortoises or Turtles

Lizards

Tetrapoda Area

Reptilea

Snakes Mamalia

Crocodiles, Aligators and Gavialis

Matatheria

Crothei 10 orders (AMNIOTE)

Eatheria

Protothesia

Thesia

species on Earth. Nearly 2 million such animals have been identified so far, constituting about 98 per cent of the total members identified in the entire animal kingdom. Many invertebrates, such as earthworms, have no hard body parts at all and their body shape is maintained by means of an internal pressure, similar to the one in an inflated balloon. But having a soft body has its own disadvantages as well, one being such that animals are vulnerable to attack from predators. And for defence against predators, other invertebrates have evolved exoskeletons—hard outer shell-like coverings found in clams and mussels and the body cases surrounding adult insects. The exoskeletons also provide anchorage for muscles. Arthropods, the animals having a hard outer skeleton, make up the single largest group of invertebrates. Arthropods include insects, crustaceans and arachnids, such as spiders and ticks.

VerteBrAtes (Phylum ChordAtA) These are animals that possess a backbone or spinal column, made of interlocking units called vertebrate. Also called as phylum Chordata, vertebrates have a strong, but flexible, structure that supports the body and anchors the limbs. They also protect the nerves of the spinal cord. They include fish, amphibians and reptiles, as well as birds and mammals. In all vertebrates, the spinal column forms part of a complete internal skeleton, which can grow gradually along with the rest of the body. Vertebrates constitute only about 2 per cent of the total animal species. Vertebrates also have highly developed nervous systems, due to which they can react very quickly to changes in their surroundings, giving them a competitive edge.

Four Evolutionary Lines of Placental Mammals

(i) Insectivorous: It includes primitive insect-eating placental mammals and the group arising from it, such as bats and primates.

(ii) Rodents and rabbits: Both groups have no canines. The incisors are adapted for gnawing.

(iii) Whales, dolphins and tortoises: They are aquatic placental mammals and have flipper-like forelimbs and lack hand limbs.

(iv) Elephants, carnivores and ungulates: Elephants have padded feet and no hooves. Their trunk is an elongated nose and the tusks are modified incisors. Carnivores are flesh-eating; ungulates are hoofed herbivorous mammals.

Mammals: Evolutions

Mammals belong to subphylum Vertebrata. The mammals evolved from a lineage of reptiles about 225 million years ago. Presently, nearly 4,500 species of mammals are found on Earth. The order Primates contains our species, H. sapiens. Primates belong to class Mammalia and show all the features of mammals, including hair and milk glands for nursing the young. They are endothermic, have vertebrae and a skeleton and are segmented deuterostomes, with a coelom made from an outgrowth of the digestive tract. Primates are eutherians, that is, they have a placenta that provides an intimate mother–child relationship where the mother nurses the child.

Characteristics of Primates

Primates are characterised by certain uniting features, including limber shoulders and hip joints to allow a great range of movement, opposable thumbs and big toes to grab food or hang on to branches, presence of a clavicle (a nail on the fi rst toe) and a large brain. Besides, primates have highly sensitive hands, which lend them the sense of touch. Their eyes are set close together to enhance depth perception. Having evolved from an arboreal

ancestor during the Mesozoic era, most primates still live on trees. The most advanced known primates are humans.

Families

in the Order Primates

There are 13 families in the order Primates.

Suborder Strepsirhini Suborder Haplorrhini

1. Family Lemuridae—lemurs 8. Family Tarsiidae

2. Family Cheirogaleidae 9. Family Cebidae

3. Family Indriidae—indris 10. Family Cercopithecidae

4. Family Daubentoniidae 11. Family Callitrichidae

5. Family Galagonidae 12. Family Hylobatidae—gibbons

6. Family Lorisidae—lorises 13. Family Hominidae— humans, chimpanzees, gorillas, orangutans

7. Family Megaladapidae

Family Hominidae

The family that humans belong to—Family Hominidae— also includes chimpanzees, gorillas and orangutans. There are only four generae and six species in this family, but it is a very diverse group. Male hominids are larger than females, and they have opposable thumbs and big toes, except for humans. Hominids, probably the most advanced family in the world, possess developed forearms with legs longer than the arms. They lack a tail and all the species in this family, other than humans, are good tree climbers. Hominids also have a unique structure of their teeth with canines that have not developed into tusks and broad incisors. Even chimpanzees can learn human sign language and show innovation when solving problems. Following species are included under the Family Hominidae:

■ Gorilla beringei beringei—Mountain gorilla

■ Gorilla gorilla gorilla—Western lowland gorilla

■ Homo sapiens—Humans

■ Pan paniscus—Bonobo, or pygmy chimpanzee

■ Pan troglodytes—Chimpanzee

■ Pongo pygmaeus—Orangutan

Homo sapiens—Humans

Homo sapiens (our species) are the only living species in the Homo genus. The main characteristics here are bipedal posture, excellent eyesight and a large brain that allows problem-solving capabilities and innovative thinking. The head is larger than other primates because the skull

requires room to enclose the large brain. Humans also have a highly developed nervous system and strong senses. Like other apes, humans too have opposable thumbs and nails on their fingers but lack tails. The upper legs have very strong muscles, thereby allowing them to stand upright. A curve in the spine near the lower back allows upright posture because the centre of gravity of a human is directly over the pelvis. (To know more in detail about human evolution, please see chapter ‘Evolution and Natural Selection’)

Evolution of Homo sapiens

Humans are said to have evolved from Australopithecus afarensis, the first species that was to stand upright. But when compared to that of a human, the brain of A. afarensis was small. While A. afarensis became extinct about 1.4 million years ago, they apparently gave rise to Homo genus. Homo habilis (handy man), seen about 2.5 million years ago, was the first species of this genus. H. habilis could stand upright, had much larger brain than A. afarensis, were probably able to use simple tools and lived a hunting/gathering lifestyle. Homo habilis gave rise to Homo erectus (upright man) around 1.8 million years ago. They were bigger in size and had an even larger brain. This species lived in groups, made permanent settlements and was even able to develop some civilisation. Homo erectus vanished about 2,50,000 years ago, but not before giving rise to our species, the Homo sapiens. First seen about 3,00,000 years ago, Homo sapiens had thicker bones, a larger brain and pronounced brow ridges. While some scientists maintain that this species originated in Africa, others contend that simultaneous evolution took place at several places. Initially, Homo sapiens were hunters/gatherers and scavengers, but farming began about 5,000 years ago and people started settling down, raised crops and reared domestic animals. Once humans were settled, civilisation took hold; first in Mesopotamia and subsequently in Egypt and elsewhere.

mammals that they have introduced into new environments. The class Mammalia includes about 19 living orders of mammals and an equivalent number of extinct ones. The individual species are widely distributed, from the edges of the Arctic ice cap in the north, down through temperate, desert, and tropical areas, to the edge of the Antarctic continent in the south; they also occupy oceans and major river systems of the world.

Reptiles

Reptiles are characterised by a combination of features, none of which alone could separate all reptiles from all other animals. Among these features are

(i) cold-bloodedness;

(ii) the presence of lungs;

(iii) direct development without larval forms as in amphibians;

(iv) a dry skin with scales but not feathers (a characteristic of birds) or hair (a characteristic of mammals);

(v) an amniote egg;

(vi) internal fertilisation;

(vii) a 3–4 chambered heart;

(viii) two aortic arches (blood vessels) carrying blood from the heart to the body; mammals have only one aorta on the left; birds also have one but on the right;

(ix) a metanephric kidney;

(x) 12 pairs of head (cranial) nerves; amphibians have 10; and

(xi) some special skeletal features.

Aves

Amphibians

Amphibians are members of the class Amphibia, subphylum Vertebrata, phylum Chordata. The class Amphibia includes frogs, toads, salamanders, etc. Amphibians are characterised by a glandular skin without external scales, by gills during development (and in adulthood in some) and by eggs that may have jelly coats but develop without formation of extra-embryonic membranes such as the amnion. Most amphibians also have four limbs. Limbs and lungs are adaptations for life on land; the limbs evolved from the ancestral fishes’ lobed fins. The scales and amniote egg evolved by reptiles are further adaptations for life on land and distinguish reptiles from amphibians.

Mammals

Mammals are the dominant life forms on Earth today and have been for many millions of years, even though the number of living species is small when compared to the 7,50,000 species of insects. Over of the world the character of the landscape has been transformed by the activities of humans and the other

Birds, class Aves, are warm-blooded, egg-laying vertebrate animals covered with feathers and possessing forelimbs modified as wings. Among the vertebrates they are the most strongly adapted for flying, although not all birds fly and not all flying vertebrates are birds. Bats are mammals and the extinct pterosaurs were reptiles. All modern birds are descended from flying ancestors, but a few families such as ostriches, emus, and rheas, and some species of otherwise flying families—e.g. some grebes and cormorants—have lost the capacity for aerial flight. Other birds, such as penguins, have become adapted to flying in much denser medium—water.

Types of Mammals

(a) Monotremes With only three living species, monotremes are mammals that lay eggs. The eggs are then incubated in a nest. Once they hatch, the young ones feed on the milk secreted by the fur of the mother. Platypus and Echidna two monotreme species, live in Australia.

(b) Marsupials Found in Australia, New Zealand and Central and South America, marsupials give birth to tiny embryos that are attached to the mother’s nipple and grow in an external pouch attached to the mother’s abdomen, called a marsupium. Example: Kangaroo.

(c) Eutherians Also known as placentals, eutherians make a long-lasting mother–child relationship. About 95 per cent of the mammals are eutherians and natural selection favours a long-term relationship between the mother and child, as the originally weak and helpless infant needs protection.

BAsiC Cell Biology

the Cell

Cells are the basic units of life and the smallest parts of a living organism that can lead an independent life. In fact, there is no known form of life that does not depend on the cell. Singly or in groups, they make up the bodies of living beings. Though the human body contains over 50 million cells, it traces its origin to a single cell.

size And shAPe of Cells

They vary considerably in size with the smallest cell, mycoplasma (a type of bacterium), measuring 0.0001 mm in diameter while the largest ones, such as the nerve cells running down a giraffe’s neck, may exceed 3 m in length. In humans, small red blood cells (RBCs) measure only 0.00076 mm while liver cells may be 10 times larger. About 10,000 average sized human cells can fit on the head of a pin.

Cells present an array of shapes. While E. coli (a bacterium) resembles a rod, paramecium (a protozoan) is slipper shaped. And amoeba, another protozoan, has an irregular form that changes shape as it moves around. Plant cells typically resemble boxes or cubes. In humans, the outermost layers of skin cells are flat while muscle cells are long and thin. Due to their elongated, tentaclelike extensions, some cells may resemble an octopus. The shape is typically tailored to do the cell’s job in multicellular organisms. For example, flat cells pack tightly into a layer to protect the underlying tissues from invasions of bacteria; long, thin muscle cells contract readily to move bones.

Cell Biology: Chronology

1500: Janssen invents compound microscope, which combines two lenses for greater magnification.

1665: English scientist Robert Hooke for the first time views tiny compartments in a section of cork under his selfmade microscope, and names them cells.

1665–1670: Anthony van Leeuwenhoek observes nuclei and unicellular organisms, including bacteria.

1667: Bacteria are described for the first time as ‘animalcules’.

1824: R.J.H. Dutrochet declares that both animals and plants are made up of cells.

1830–1831: Robert Brown first observes the ‘nucleus’ of the cell. Van Mohl and Purkings coin the term ‘protoplasm’ for the fluid content of the cell.

1838: The term ‘cytoplasm’ is introduced.

1839: Schleiden (a botanist) and Schwann (a zoologist) produce the ‘cell theory’, which states that the cell is the basic unit in living organisms.

1840: Purkioje proposed the term 'protoplasm’ to the contents of the cell.

1855: Virchow shows all cells arise from the pre-existing ones through cell division.

1860–1900: Haeckel (in 1866) establishes that the nucleus is responsible for storing and transmitting hereditary characteristics. Chromosomes described in 1870; chloroplasts discovered in 1881; mitochondria discovered in 1890; Golgi apparatus discovered in 1898; Mendel’s work rediscovered, giving an impetus to cytogenetics (functioning of nucleus in heredity). Light microscopy reached the theoretical limits of resolution by the early 1900s; improvements in microscope, fixtures, stains and sectioning by the 1920s.

1930s: Electronic microscope with greatly improved resolution is developed.

1950s: Electronic microscope becomes widely useful in biology, revealing a much more detailed structure of the cell.

Cell struCture

A cell is composed of non-living structures called molecules, which in turn result out of an amalgam of atoms. Small molecules join together to form the larger ones. Proteins, nucleic acids, carbohydrates and lipids, which include fats and oil, are the four major molecules that underline cell structure and also participate in cell functions. Example: A large number of lipids, proteins and protein-sugar compounds firmly join together to form the plasma membrane or outer boundary of certain cells. Then, membrane-bound compartments in cells called organelles that constitute

Nerve cells
Red blood cell
Leaf pore guard cell
Paramecium
Diatom
Muscle cells
FIG. 1.6 Shapes of Some Types of Cells

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