ICRISAT Happenings

1 February 2013

No. 1556

(L-R) Dr Swapan Datta, DDG (Crop Science), ICAR; Mr Ashish Bahuguna, Secretary, Ministry of Agriculture, GoI; Dr William Dar, Director General, ICRISAT; and Dr Rajeev Varshney, coordinator of ICGSC and Director – Center of Excellence in Genomics, ICRISAT during the press conference announcing the decoding of the chickpea genome sequence at Krishi Bhavan, New Delhi.

Global research team decodes genome sequence of 90 chickpea lines Decoded genome of chickpea, a leading grain legume for many poor smallholder farmers, promises improved livelihoods in marginal environments

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n a scientific breakthrough that promises improved grain yields and quality, greater drought tolerance and disease resistance, and enhanced genetic diversity, a global research team has completed high-quality sequencing of not one but ninety genomes of chickpea.

that define the chickpea plant. It also reveals clues on how the sequence can be useful to crop improvement for sustainable and resilient food production toward improved livelihoods of smallholder farmers particularly in marginal environments of Asia and sub-Saharan Africa.

Nature Biotechnology, the highest ranked journal in the area of biotechnology, featured the reference genome of the CDC Frontier chickpea variety and genome sequence of 90 cultivated and wild genotypes from 10 different countries, as an online publication on 27 January 2013. The paper provides a map of the structure and functions of the genes

The research milestone was the result of years of genome analysis by the International Chickpea Genome Sequencing Consortium (ICGSC) led by ICRISAT, involving 49 scientists from 23 organizations in 10 countries.

The global research partnership succeeded in identifying an estimated 28,269 genes of chickpea to page 2 ...4

Global research team decodes chickpea genome....from page 1 after sequencing CDC Frontier, a kabuli (largeseeded) chickpea variety. Re-sequencing of additional 90 genotypes provided millions of genetic markers and low diversity genome regions that may be used in the development of superior varieties with enhanced drought tolerance and disease resistance. This will help chickpea farmers become more resilient to emerging challenges brought about by the threat of climate change. The genome map can also be used to harness genetic diversity by broadening the genetic base of cultivated chickpea genepool.

“ICRISAT and its partners have once again demonstrated the power of productive partnerships by achieving this breakthrough in legume genomics,” said Director General William Dar. “Under the CGIAR Research Program (CRP) on Grain Legumes led by ICRISAT along with other CGIAR Consortium members and program as well as national partners, genome sequencing will play a crucial role in speeding up the development of improved varieties for smallholder farmer crops such as chickpea.”

“In the face of growing global hunger and poverty amid the threat of climate change, the chickpea genome sequence will facilitate the development of superior varieties that will generate more income and help extricate vulnerable dryland communities out of poverty and hunger for good, particularly those in the drylands of Asia and sub-Africa for whom ICRISAT and our partners are working,” Dr Dar added.

“Currently, it takes 4-8 years to breed a new chickpea variety. This genome sequence could reduce by half the time to breed for a new variety with market-preferred traits,” he added.

Highlighting the importance of the research, renowned agricultural scientist Prof MS Swaminathan, Member of Indian Parliament, said, “I would like to compliment the excellent scientific work done by Rajeev Varshney of ICRISAT and his colleagues in developing a high-quality genome sequence of chickpea. I am confident that the knowledge provided by this study will help accelerate the improvement of this crop through marker-assisted breeding.”

Recognizing the efforts of the global research team, Mr Ashish Bahuguna, Secretary, Ministry of Agriculture, Government of India said, “Decoding of the chickpea genome would facilitate the development of improved varieties with higher yields and greater tolerance to biotic and abiotic stresses. This would help chickpea farmers to increase productivity, reduce cost of inputs and realize higher incomes.” He added: “This development is of great importance to India, the largest producer and consumer of chickpea.”

Highlighting the importance of the breakthrough to India, Dr Swapan Datta, Deputy Director General – Crop Science, Indian Council of Agricultural Research (ICAR), said, “The chickpea genome sequence is expected to help in the development of superior varieties with enhanced tolerance to drought and resistance to several biotic stresses.

India will benefit most from this genome sequence, our country being the largest producer of chickpea.

This, in my opinion, is by far the most significant

“Genetic diversity, an important prerequisite for crop improvement, is very limited and has been a serious constraint for chickpea improvement. This study will provide not only access to ‘good genes’ to speed up breeding, but also to genomic regions that will bring genetic diversity back from landraces or wild species to breeding lines,” explained Dr Rajeev Varshney, coordinator of ICGSC and Director – Center of Excellence in Drs Dar and Varshney addressing the media during the press conference.

Genomics, ICRISAT. 2

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CGIAR Research Programs on Grain Legumes and Dryland Cereals implementation workshops and launch next week

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CRISAT is organizing Implementation Workshops and a joint inception session of the two CGIAR Research Programs on Grain Legumes and Dryland Cereals on 4-8 February at the ICRISAT headquarters in Patancheru. Following is the schedule and venue of the meetings: 4-5 Feb: Implementation Workshop on Dryland

Cereals (PTTC Conference Room) 6 Feb:

Joint Inception Session for Dryland Cereals and Grain Legumes (Ralph Cummings Auditorium)

7-8 Feb Implementation Workshop on Grain

Legumes (PTTC Conference Room) The workshops, to be facilitated by Dr Jurgen Hagmann of Pico Team, South Africa, will involve collaboration between ICAR, ICRISAT and the global genomics community.”

According to Professor Jun Wang, Director of BGI, “The collaboration between BGI and ICRISAT has yielded significant achievements in orphan crops research, like the pigeonpea genome before and now, the chickpea genome. I believe that our partnership will revolutionize research on orphan crops, which are key staple crops in many lowincome countries and are extremely important to smallholder farmers worldwide.

“The importance of this new resource for chickpea improvement cannot be overstated. This genome sequence will provide the basis for a wide range of studies, from the important goal of accelerated breeding, to identifying the molecular basis of a range of key agronomic traits, to basic studies of chickpea biology,” said Professor Doug Cook from the University of California-Davis, USA. “Making the chickpea genome available to the global research community is an important milestone in bringing chickpea improvement into the 21st century to address nutritional security of the poor – especially the rural poor in South Asia. We look forward to seeing how researchers around the globe will harness this resource to increase chickpea productivity against the backdrop of climate change

facilitated sessions and focus on more clearly defining the roles, responsibilities and requirements of all partners to effectively participate in the Programs to ensure that their stated objectives are met. More detailed work planning will take place at a Regional/Product Line/Center level after these initial workshops.

Participants will include partners from CGIAR Centers (CIAT, ICARDA, IITA), NARS in Asia and sub-Saharan Africa (SSA), donor representatives, the CEO of the CG Consortium, Consortium Board member based in India, the ICRISAT Board Chair and ICRISAT staff based in SSA and Asia.

In addition, Steering Committee meetings for both Grain Legumes and Dryland Cereals will be held in the afternoon of 6 February. g in the developing world,” according to Dr David Bergvinson, Senior Programme Manager, Science & Technology, Global Development, Bill & Melinda Gates Foundation.

The chickpea genome sequencing project was undertaken by the ICGSC led by ICRISAT, the University of California-Davis (USA) and BGIShenzhen (China) with key involvement of national partners in India, USA, Canada, Spain, Australia, Germany and Czech Republic.

The initiative was funded by the CGIAR Generation Challenge Programme (GCP), US National Science Foundation (NSF), Saskatchewan Pulse Growers (Canada), Grains Research & Development Corporation (Australia), Indo-German Science Technology Corporation (Germany and India), National Institute for Agricultural and Food Research and Technology (Spain), National Research Initiative of US Department of Agriculture’s National Institute of Food and Agriculture (USA), Ministry of Education, Youth and Sports of the Czech Republic and the European Regional Development Fund, University of Cordoba, ICAR (India), BGI (China) and ICRISAT. Link to full paper on Nature Biotechnology Journal: http://www.nature.com/nbt/journal/vaop/ncurrent/ full/nbt.2491.html g ICRISAT Happenings 1 February 2013/1556

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Project on recycling wastewater to improve agricultural production and farmers’ livelihoods launched

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iming to address issues of water scarcity, poverty and food insecurity through wastewater reuse for agriculture, ICRISAT is now leading a consortium of national partners in the implementation of India’s component of the project “Integrating bio-treated wastewater reuse with enhanced water-use efficiency to support the green economy in EU and India.” The project, also known as ‘Water4CropsIndia’, is a mirror of EU’s Water4Crops project composed of 21 consortium (L-R) Mr Dinakar Babu, Dr Antonio Lopez, Dr Dar and SP Wani during partners led by the Istituto di Ricerca the project’s kick-off meeting at Patancheru.

Sulle Acque – Consiglio Nazionale delle Ricerche (IRSA-CNR), Department of Bari, Italy. have joined hands with private entrepreneurs to find a win-win solution to wastewater disposal using At the inaugural session of the project’s kick-off bio-treatments for reuse in agriculture. This initiative meeting on 29 January at the ICRISAT headquarters will benefit farmers, industries, researchers as well as in Patancheru, Director General William Dar said, government organizations.

“Water reuse is of critical importance to the semiarid regions of the world. Following ICRISAT’s Among the Indian consortium partners are: The successes with rainwater harvesting and Energy Research Institute (TERI); National management, we will now lead the Indian Environmental Engineering Research Institute consortium in venturing into recycling industrial and (NEERI); Euro India Research Centre (EIRC), domestic wastewater for agricultural use to improve University of Agricultural Sciences Bangalore the livelihoods of the rural poor, particularly those in (UASB); University of Agricultural Sciences Dharwad the country’s dryland areas.”

(UASD); MS Swaminathan Research Foundation (MSSRF); SABMiller, India; and Jain Irrigation Also speaking at the inaugural session, Mr Dinakar Systems Limited (JISL).

Babu, Collector, Medak district, Government of Andhra Pradesh, highlighted the need for recycling Through this initiative, Europe and India will share and reusing water and promised to extend support in experiences, technologies and knowledge to benefit setting up the site in Medak district for industrial farmers, researchers and policy makers. The wastewater recycling. consortium will be working on three types of industrial waste water mainly from the Charminar The two-day kick-off meeting, attended by EU and Breweries of SABMiller, India in Andhra Pradesh; the Indian consortia partners from state agricultural Onion and Fruit Processing Plant at JISL, Jalgaon in universities, national research institutes, Maharashtra; and the Sugar Factory from Ugar Sugar nongovernment organizations (NGOs), and private in Karnataka. industrial partners, aimed to discuss India’s side of the workplans; prepare detailed activity plans with Treatment of domestic wastewater will be studied milestones and timelines; identify opportunities for and used in Hyderabad, Andhra Pradesh; Kolar, collaboration among the Indian partners and Karnataka; and Nagpur, Maharashtra; and saline develop package-wise ties with EU partners; build wastewater from industries in the coastal regions. the consortium team; and discuss the project’s The consortium will also address the issue of dissemination and communication strategy. rehabilitating degraded lands using untreated wastewater at certain sites to be identified.

Under the project, ICRISAT along with its consortium partners will embark on recycling treated wastewater The project is led in India by Dr S P Wani, ICRISAT (grey water) from domestic use and industrial Principal Scientist (Watersheds) and in Europe by wastewater. The consortium is unique as national and Dr Antonio Lopez, Head of Unit, National Research international research organizations and universities Council, Water Research Institute, Italy. g 4

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USAID supports project to apply genomics research to pigeonpea improvement

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n the fight against poverty and hunger amid the threat of climate change, highly nutritious and drought-tolerant crops are the best bets for smallholder farmers. To assist pigeonpea breeders develop such improved cultivars more efficiently using genomic tools, a threeyear, US$2-million pigeonpea molecular breeding project was launched on 30 January at ICRISAT-Patancheru.

Releasing the ICRISAT-USAID project document during the project

The project “Pigeonpea Improvement launch at Patancheru. using Molecular Breeding” supported by improve the lot of resource-poor farmers particularly the United States Agency for International in the pigeonpea growing countries of the world.”

Development (USAID) India Mission will be implemented by ICRISAT along with the National “Under the CGIAR Research Program (CRP) on Bureau of Plant Genetic Resources (NBPGR), New Grain Legumes led by ICRISAT along with other Delhi; the University of Agricultural Sciences (UAS), CGIAR Consortium members and program as well as Raichur, Karnataka; Acharya NG Ranga Agricultural national partners, genomics research will play a University (ANGRAU), Hyderabad; and other crucial role in speeding up the development of partners in India and Africa. improved varieties for smallholder farmer crops such “I am very pleased to announce this new partnership as pigeonpea,” he added. between the Governments of India and the United Dr Swapan Datta, Deputy Director General (Crop States, and ICRISAT – a partnership that will take Science), ICAR said, “We are very excited to see the new studies in pigeonpea genomics to the next stage launch of this USAID project.” Speaking on the of scientific research. This collaboration will improve occasion, Dr Rajeev Varshney, Project Coordinator the agricultural productivity of pigeonpea, a main and Director, Center of Excellence in Genomics, said source of protein for more than a billion people in the primary objective of the project was to translate Asia, Africa, Latin America, and the Caribbean,” said genome information into the farmers’ fields. “The Ms Elizabeth Warfield, Deputy Mission Director, project team is quite confident and looks forward to USAID, New Delhi during the project launch. working with different partners and stakeholders in Acknowledging USAID’s commitment to the project, enhancing pigeonpea crop productivity to ensure food security in India and generate more incomes for Director General William Dar said, “USAID has farmers in Africa,” he added. always been an advocate of the agricultural research-for-development continuum. Thus, this The project launch meeting brought together about project has a research component in Phase I and an 70 delegates from India, Ghana, Mozambique, application component in Phase II. This project is Uganda, Tanzania and Malawi and private sectors. g another testament to USAID’s commitment to

ICRISAT and Gulbarga University sign agreement for collaborative research

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o facilitate joint basic and strategic research in the biological sciences, Dr CLL Gowda, Director, Research Program - Grain Legumes and Dr SL Hiremath, Registrar of Gulbarga University signed a Memorandum of Understanding (MoU) on 18 January to enable the University’s botany, zoology, microbiology and biochemistry students to conduct

their research dissertation at ICRISAT, with ICRISAT scientists acting as chairman and co-chairman of their dissertation committees. Present on the occasion were Professor ET Puttaiah, Vice-Chancellor; Dr Sreemalu, Professor of Biochemistry; and Dr HC Sharma. g ICRISAT Happenings 1 February 2013/1556

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ICRISAT at BioAsia 2013

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Agricultural biotechnology has the potential to reduce crop losses, improve nutrient efficiency of food, extend the postharvest life of fruits and vegetables, and increase the stress tolerance of plants. In developing countries in particular, it has the potential to revitalize the agricultural sector and enhance profitability of farming,” said Director General William Dar, during his Special Address at the inaugural session of BioAsia 2013, held on 28-30 January in Hyderabad. He also stressed on the Dr Dar during his Special Address at the inaugural session of BioAsia need for public-private sector partnerships as key to innovations that 2013 at HICC, Hyderabad. would help poor farmers get out of poverty. biotechnology and commerce to help leverage the agricultural sector and achieve sustainable levels of Speaking as Chief Guest, Union Minister of State for global food security. Andhra Pradesh Chief Minister Commerce and Industries, Ms D Purandeswari Mr Kiran Kumar Reddy, speaking at the opening pointed out that with India emerging as the third program of AgBioAsia, urged entrepreneurs and largest in the biotechnology sector, around 40-50 scientists to ensure that biotechnology products are percent of global exports in biosimilars could be within the reach of the common man, expected from the country in the next decade. acknowledging institutions like ICRISAT for working towards this end.

The tenth edition of BioAsia focused on the next wave in biotechnology, with eminent speakers from Topics discussed at AgBioAsia included: the industry and the academe elucidating on diverse biotechnology and social responsibility; topics such as: bio-medical research and regulatory communicating biotechnology; opportunities and environment; growing partnerships between challenges in public sector R&D in translational biologics innovators and biosimilars’ manufacturers; research; food safety regulations; addressing global next big trends in healthcare; and the role of food security and climate change through emerging markets in the area of global biologics. The biotechnology; and stewardship and liability issues event had more than 500 delegates from 45 countries in the deployment of transgenic crops. The sessions with Spain being the partner country. were sponsored by the Ministry of Food Processing Industries, Government of India. Representing ICRISAT co-hosted the AgBioAsia 2013 sessions, ICRISAT at the sessions were Joanna Kane-Potaka, which aimed to bring together the power of KK Sharma and Suresh Pande.

BioAsia 2013 was hosted by the Government of Andhra Pradesh, with the support of the Federation of Asian Biotech Associations (FABA) and Pharmaceutical Export Promotion Council (Pharmexcil). g

Joanna Kane-Potaka, Kiran Sharma and Suresh Pande at BioAsia 2013.

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Tropical Legumes II Project Management Team meets, finalizes country strategies

Participants of the Project Management Team meeting.

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o review project progress and propose alignments with the CGIAR Research Program on Grain Legumes, a Project Management Team meeting of the Gates Foundation-funded Tropical Legumes II project was held on 24-25 January in Nairobi, Kenya. The project aims to enhance the production and productivity of six grain legumes (chickpea, common bean, cowpea, groundnut, pigeonpea and soybean) in the drought-prone areas of sub-Saharan Africa and South Asia.

The meeting sought to: review the complementarities between Phase I and II of the project and the CGIAR Research Program on Grain Legumes and propose the best way to maximize synergies to deliver the project outcomes; review progress of the Tropical Legumes I Database Management Platform being implemented by aWhere consultancy; refine and finalize the legume ‘country x crop’ strategies and seed road maps; review the logframes and milestones; and revisit the project monitoring and evaluation plan.

Country strategies were finalized and a project report on legumes country strategies and seed road maps for all 15 countries will be compiled for publication.

Project scientists agreed to develop and implement a common Review and Planning meeting with the Tropical Legume I phase in order to incorporate the products of the first phase research into the Phase II workplans. The first such meeting is planned in May 2013. Reporting frequencies and formats and templates for data collection were agreed upon. The team will complete a Monitoring, Learning and Evaluation plan to be shared among team members and the donors.

The participants of the meeting included CLL Gowda, ES Monyo, Jupiter Ndjeunga, P Janila, Dave Hoisington, Said Silim, Cynthia Bantilan, PM Gaur and KB Saxena (ICRISAT); Boukar Ousman and Hesham Agrama (IITA); Steve Beebe and JC Rubyogo (CIAT); Dr Jeff Ehlers, Senior Program Officer, Gates Foundation; and regional Principal Investigators from ICRISAT, CIAT and IITA. Jim Pollock from aWhere consultancy participated as an observer. g

Welcome Dr Rajneet Kaur Uppal, an Indian national, joined as Visiting Scientist (Systems Agronomy) – Resilient Dryland Systems, ICRISAT, Patancheru, on 29 January. She has a PhD in Agriculture from the University of Reading, UK. Prior to taking up this assignment, she was a Research Fellow at University of Reading.

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Farmers’ field day on combine harvester for chickpea held in Gulbarga

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early one hundred farmers from three villages (Martur, Nelogi, and Etiga) in Gulbarga district of Karnataka participated in a field day to demonstrate the use combine harvester for chickpea. The event was organized on 18 January by Agricultural Research Station (ARS), Gulbarga of the University of Agricultural Sciences (UAS), Raichur.

In Gulbarga, labor shortage in agricultural operations such as chickpea harvesting has become a constraint in crop Dignitaries addressing farmers during the field day. production. Hence, the use of combine harvester has become necessary. Combine varieties supplied in the village, and the potential harvesting of the chickpea variety JG 11 grown on management technologies needed, including nearly 2 hectares showed <1% harvest loss. Farmers, mechanical harvesting. however, prefer to use the machine in spite of the Dr CLL Gowda, Director, Research Program - Grain loss considering the time and economics involved.

Legumes was the Chief Guest during the event. It Farmers in the villages had been provided with two was attended by staff of ARS Gulbarga (Drs chickpea varieties – MNK1 and JG11 – for largeDharnaraj, Mannur, Patil, Kantharaju); KP scale testing. Both varieties performed well during Viswanatha (Director of Extension UAS, Raichur); Dr this season in spite of severe drought. During the DM Mannuur, chickpea breeder at ARS; staff from field day, farmers and researchers had the the Department of Agriculture; and students from opportunity to share their views on the chickpea Agricultural College, Gulbarga. g

Visitors’ log 28 January: Thirty five (35) farmers from Jhabua and Mandla districts, Madhya Pradesh; and Mr Suresh Chukkapalli, Chairman of Pheonix group, Hyderabad.

29 January: Dr Sunkook Kwon and Ms So Young Park from the Asian Science Park Association (ASPA) and 40 officials of the Indo-European group.

01 February: Professor Liao Boshou, Deputy Director, Oil Crops Research Institute (OCRI) of the Chinese Academy of Agricultural Sciences, Wuhan, People’s Republic of China.

Thought for the week “It takes a lot of imagination to be realistic, because reality is so much more than we imagine.”

- Alpha Dog Lo