2011 Guidelines

Page 1

11111011011 Pedro Lopes pedrolopes@ua.pt


‣ WAVe

‣ GEN2PHEN

• Research

• WAVe

• Development

• Leicester internship

• Publications ‣ RECOMB2010 + JBI2010 + ITAB2010 + SPGH2010 + HM (?)

‣ http://bioinformatics.ua.pt/WAVe

‣ From relational databases to semantic web knowledge • 2 prototype apps

‣ EU-ADR • Web Platform Preview ‣ XSD + Workflow

2010


2010


{ coeus } + { diseasecard } + { wave } + { writing }

guidelines


‣ Semantic Web Application Framework • Streamlined application deployment ‣ Web server + database + configuration file = SW app • Federation ‣ Distributed knowledge network

‣ Research & Development • Monthly release cycle • Alpha release expected for June ‣ DiseaseCard seed

coeus


1955 COEUS CONNECTORS CSV

JS

SQL

WS

XML

3S DB Package: COEUS Data, Connectors Result: Knowledge Seed [only data] - Seed ready for usage

coeus


1985 3S DB SEED

COEUS API REST + SOAP

SPARQL

WEB APP

Package: COEUS API Result: Knowledge Seed + Web App - App online + Seed "on garden"

coeus


2015 SEED

SEED SEED

SEED

SEED SEED

COEUS FEDERATION COEUS API REST + SOAP

SPARQL Package: COEUS Federation Result: Federated Knowledge Garden - Distributed Knowledge Network

coeus

KNOWLEDGE GARDGEN


coeus


Concept

Seed

Host coeus:isResourceOf Description

Version coeus:host

coeus:hasModule

coeus:hasResource

coeus:isModuleOf

coeus:extends

Shortname

Public (boolean)

rdfs:versionInfo coeus:public Seed

rdfs:label

Version rdfs:versionInfo Resource

rdfs:description Description coeus:hasModule

Description

coeus:method

coeus:isIncludedIn Entity

Name rdfs:label

Module

Bridge Method

Name

Description coeus:loadsFrom

Item property

coeus:loadsFor

Shortname

coeus:property coeus:query

XML

coeus:hasBridge

Concept

coeus:loadsFrom Concept

coeus:isConceptOf rdfs:description

dc:title Item

coeus:isConceptOf coeus:isAssociatedTo

SQL Token

Description

coeus:replace SQL

dc:title

rdfs:label

coeus:hasConcept

Predicate

coeus:property Name

Concept

XML Token

coeus:loadsFor

coeus:hasConcept

coeus:isConnnectedTo

SQL Query

coeus:query coeus:username Description

rdfs:description Shortname

coeus:password

rdfs:label coeus:loadsFrom Shortname Name coeus:enabled coeus:loadsFor

Username

coeus:column

Password

Item coeus:isAssociatedTo

Column Name

Enabled (Boolean)

CSV

coeus

XPath Query

coeus:replace

coeus:isBridgedTo coeus:hasEntity Enabled (Boolean)

coeus:isConnnectedTo

Predicate

Enabled (Boolean) Extension

coeus:enabled

coeus:isEntityOf

Address

coeus:method

Access Method

coeus:enabled

dc:source Bridge Plugin (Boolean) coeus:extension

Module rdfs:label

dc:source

rdfs:description Shortname

dc:title coeus:plugin rdfs:label

coeus:isModuleOf rdfs:description

Entity

Name

dc:title

Name

rdfs:label

coeus:includes

rdfs:description

coeus:property

Predicate

coeus:column coeus:line coeus:replace coeus:delimiter

Column Number

Line Delimiter

CSV Token


‣ DiseaseCard4 • Requirements analysis completed • New UI ‣ New interaction paradigm

‣ Bridging the gap between the genotype to the phenotype ‣ Development • COEUS-based • First prototype/seed/proof-of-concept

diseasecard


‣ Status • v1.2.1 online • Human Mutation publication waiting confirmation...

‣ Development • There is always something to update.. • Monthly release cycle ‣ Next: v1.2.2 this week

wave


‣ Publications • COEUS ‣ SWAT4LS2011

‣ Thesis • Define structure ‣ ASAP

‣ Software Engineering Journal

• Writing begins after COEUS

‣ Whatever opens up...

• Starting around October...

• EU-ADR

writing


omments, questions, suggestions, critics, advice, feedbac


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