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2021-2022
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TABLE OF CONTENTS 4 Investigating the Phase Separation Behavior of the Transcriptional Repressor Yan in Drosophila Melanogaster Daisy Maslan is a second-year in the college. After taking the winter quarter advanced biology class with Professor Rebay, she became interested in fly genetics. In the spring of her first year, she joined the Rebay lab and was mentored by Saman Tabatabae who now attends Stanford as a graduate student. In addition to her biological work, she is also a history major and involved in MUN and UChi Votes.
5 The Impact of Mutations in Wolframin on Psychiatric Disorders Saira Munshani
12 Activation of Host Kinase Vps34 by Murine Norovirus Non-structural Protein NS4 Jessica Oros is a third-year student at the University of Chicago pursuing a major in Biological Sciences with a specialization in microbiology, as well as a minor in Philosophy. After graduation, she plans to attend graduate school to study virology.
16 Long Lasting Effects of Early Life Stress on the Brain and Epigenome Omar Kassem is a 4th year student at Uchicago. He is interested in studying the role of synaptic and intrinsic plasticity in memory formation and learning. He is currently developing his thesis on the structural spine plasticity in SK2 KO mice somatosensory cortex.
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2021-2022
ABOUT SCIENTIA Dear Reader, We at The Triple Helix have been thrilled to resume in-person activities this year. During the Fall quarter, we were particularly happy to host a fascinating panel discussion with UChicago Professors Paul Serrano and Luke Joyner on the intersection of art and science. During the Winter quarter, we were excited to be joined by Kristin McWharter, a professor and artist at the School of the Art Institute of Chicago, and UChicago historian Chris Carloy to discuss the history and development of video game design, and ways in which the pandemic has shaped our aesthetic and social experience of virtual media. We are excited to bring you this latest edition of Scientia, featuring a research abstract which provides insight into how researchers use ongoing scientific work to pose new research questions, along with three full-length research articles which provide an in-depth look at how researchers investigate those questions, analyze the results, and communicate their conclusions to the Scientific community and to you, our reader. Read ahead to learn about the hand UChicago undergrads have had in exploring the behavior of the Yan gene in drosophila transcription, the role of Wolframin mutations in psychiatric disorders, the effect of Murine Norovirus on host enzymes, and the effects of early-life stress on the brain and epigenome. We are incredibly grateful to the students who contribute to the Triple Helix as writers, editors, and members of the event and design teams. Without the passion with which they approach their work, and their dedication to share their love of scientific inquiry with others, this journal would not be possible. Scientia is always looking to broaden our scope and expand the reach of our publication. If you are working on a research project you want to see in print, or if there is a profesor performing eye-opening research you would like to share, please consider writing for us! We encourage all interested writers to contact a member of our team. In the meantime, please enjoy this edition of Scientia, presented by The Triple Helix. Sincerely, John Naughton and Thea Applebaum Licht Editors-in-Chief of Scientia
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Scientia
ABSTRACT
Investigating the Phase Separation Be havior of the Transcriptional Repressor Yan in Drosophila Melanogaster Daisy Maslan Rebay Lab, University of Chicago Abstract Transcription factors are essential to genetic regulation. However, we do not have a good understanding of how transcriptional factors localize at sufficient concentrations to organize complexes at enhancer regions to affect genetic output. My work studies phase separation as a model that may answer this question. Broadly, phase separation can be understood as the organization of cellular components into a membraneless organelle-like condensate that exists at a different phase than the rest of its environment. Previous work has found that some transcription factors form aggregates, now understood as phase-separated bodies, which I will refer to as condensates. My work studies this model as it relates to the transcriptional repressor Yan in Drosophila Melanogaster; Yan is an evolutionarily conserved member of the E26 (ETS) transcription factor family, with its human paralogue referred to as Tel. Previous work from the Rebay lab has identified that Yan can form liquid-liquid phase separated condensates when overexpressed in the salivary glands of late third instar larva. My project aims to identify the mechanisms by which these phaseseparated condensates form, and, in the long term, to examine how the condensates influence Yan’s repressive function. My summer project had three goals: to assess the requirement for Yan DNA binding in condensate formation by generating a Yan mutant that can’t bind DNA; to ask whether the corepressor Groucho colocalizes to Yan condensates; and to identify tissues in which endogenous (rather than overexpressed) Yan forms condensates.
Hanson, MA. “Drosophilia female clip art. Specifically drosophilia melanogaster.” 11 Feb 2021.
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2021-2022 IN-DEPTH
The Impact of Mutations in Wolframin on Psychiatric Disorders Saira Munshani 1, Eiman Y. Ibrahim 2*, Ilaria Domenicano 2, and Barbara E. Ehrlich 2*
Key words: Wolfram syndrome, schizophrenia, bipolar disease, WFS1 mutation, mood disorders.
1 University of Chicago, Chicago, IL, United States 2. Yale University, New Haven, CT, United States
Abstract: Wolfram Syndrome is a rare autosomal recessive disease characterized by early-onset diabetes
mellitus,
neurodegeneration,
and
psychological disorders. Mutations in the gene WFS1, coding for the protein wolframin, cause Wolfram Syndrome and are associated with bipolar disorder and schizophrenia. This report aims to connect WFS1 mutations to their impact on protein expression and structure, which ultimately translates to altered cell function and behavioral alterations of an individual. Methods: Published data were used to compile WFS1 mutations associated with psychiatric symptoms, both in homozygous patients and heterozygous carriers of WFS1 mutations. These mutations were evaluated in silico using SNAP2, PolyPhen-2, and PROVEAN to predict the effects of sequence variants. Statistical analysis was performed to assess the correlation between the locations of the mutations and the damage prediction scores. Results: Several mutations, clustering in the center and C-terminus of the WFS1 polypeptide, such as A559T and R558C, are found in individuals with psychiatric diseases and appear particularly impactful on protein structure. Our analysis showed that mutations in all regions of wolframin were present in patients with schizophrenia whereas only cytoplasmic and ER luminal mutations were reported in patients with manic episodes and bipolar disorders. According to Poly-Phen-2 predictions, 82.4% of the ER lumen mutations and 85.7% of the membrane mutations are damaging. Conclusion: We propose mood disorders in Wolfram Syndrome and heterozygous carriers of WFS1 mutations are the consequence of specific
mutations in WFS1 that alter the structure of
Wolfram Syndrome affects nearly 30,000 people
wolframin, resulting in intracellular calcium
worldwide and is categorized as an orphan
dysregulations and impaired cell signaling,
disease. The pathophysiological changes that
Understanding the effect of WFS1 mutations
patients experience have been associated with
on bipolar disorder and schizoprenia is integral
various mutations in the WFS1 gene (classified
to designing clinically targeted treatments for
by Online Mendelian Inheritance in Man (OMIM
both diseases, which need more specialized
#222300). WFS1 encodes for wolframin, an
treatments.
endoplasmic reticulum (ER) associated protein, that is highly expressed in the heart, brain, lungs,
Introduction
inner ear, and pancreas (1, 5). Patients typically
Wolfram Syndrome Etiology and Diagnostic
are first diagnosed around age six with diabetes
Criteria
mellitus (1). Progressive loss of peripheral vision, Wolfram Syndrome is an autosomal
color perception, and sensorineural hearing loss
recessive progressive disease in which patients
usually occurs 4-5 years later (1, 6). Starting in
experience altered physical and psychological
early adulthood, more than half of the patients
functions. The cardinal manifestations include
develop neurological disorders, most commonly
diabetes mellitus coexisting with diabetes
manifested as ataxia, seizures, organic brain
insipidus, bilateral optic atrophy, hearing
syndrome, and peripheral neuropathy (1). During
and vision loss along with progressive motor,
this period, psychiatric symptoms, such as
autonomic and psychiatric abnormalities. (1,
depression, mania, and suicidal behavior also
2) Wolfram Syndrome is also known by the
occur (7). Brain stem atrophy is also a prominent
acronym DIDMOAD (diabetes insipidus, insulin-
feature and it is this effect that leads to an early
deficient diabetes mellitus, optic atrophy and
death, secondary to respiratory failure and
deafness). (3, 4) The course of Wolfram Syndrome
central apnea (8). Wolfram Syndrome is an
is progressive, and the prognosis is poor and
aggressive and fatal disease, with the majority of
typically terminal between 30 and 40 years of age.
patients with the disease dying before the age of
Genetic testing enables reliable diagnosis. (1, 3)
40.
5
Scientia Current Treatments Currently,
there
is
no
disease-
modifying therapy for Wolfram Syndrome. Management of this disorder is limited to treatment and control of symptoms. Patients typically receive daily insulin injections and dietary
modifications
to
control
diabetes
mellitus (9). Several other approaches have been used for the management of Wolfram Syndrome such as annual screening for diabetes mellitus, fundus examination, and urodynamic testing (1, 10). There are ongoing clinical trials for disease specific treatments. There is a phase 2 double-blind, placebo-controlled drug directed to evaluate valproic acid (Clinical Trial Number: NCT03717909), a well-known mood stabilizer (11). A second trial is testing dantrolene (Clinical Trial Number: NCT02829268), a drug used to
Figure 2: A schematic of WFS1 with mutations that have been shown to be associated with mood disorder. FIgure was adapted from 2014
treat malignant hyperthermia (12). The efficacy
Matsunaga et. al mutation map (1).
and safety of these agents for Wolfram Syndrome with the endoplasmic reticulum (17). Although full manic episodes (19). Depressive episodes the function of wolframin is unclear, several often become the more prominent aspect of remain to be established. WFS1
Mutations
and
Neuropsychiatric
Disorders Mutations in the WFS1 gene have been associated with cognitive abnormalities, in particular psychiatric disorders. These psychiatric disorders include bipolar disorder, schizophrenia,
depression,
and
suicide
tendency. Subjects who are either homozygous or heterozygous carriers for mutations in WFS1 have presented with psychiatric symptoms, ranging from mild to severe (13). The finding of WFS1 mutations in psychiatric subjects who do not have Wolfram Syndrome led to the suggestion that these mutations are associated with psychiatric symptoms (14) and that mutations in the gene WFS1 can be biomarkers and predictors for mood disorder (14, 15). Studies have shown that heterozygous carriers of WFS1 mutations (estimated to be 1% of US population) have a 26fold increased risk of having a mood disorder (16). Pathogenic mutations of WFS1 are found distributed across the entire gene, which encodes an 890-amino acid polypeptide associated
cellular pathways necessary for normal cell the disorder as patients age. Although the signaling appear to be altered by mutations in pathophysiology of bipolar disorder is not known, WFS1 including intracellular calcium signaling there are environmental, behavioral, cellular, and and its downstream effects, ER stress, and molecular components that contribute to the mitochondrial
health,
neurotransmitter risk factors (20). Evidence that bipolar disorder
production and release (17, 18). Studies of the has a genetic basis was shown by the increased role of genetics in psychiatric disorders are susceptibility if other family members have been challenging because these disorders appear diagnosed with bipolar disease, where there is to entail a network of overlapping genes. a tenfold increased risk of bipolar disease if the Similarly, it should be noted that there are both patient has an affected parent (21). Twin studies misdiagnoses, nuances, and overlap with other have shown a 70-85% concordance of disease diseases in the characterization of psychiatric expression, regardless whether the twins were disorders. Here we focus on two distinct raised separately or together (21). Schizophrenia
psychological disorders, bipolar disorder and
impairments
in
is
characterized
schizophrenia.
by
high-level
cognitive
Bipolar Disorder and Schizophrenia Etiology
functions such as memory, executive function,
Bipolar disorder is a mood disorder and attention along with irregular thought that affects approximately 2% of the human processes, social interaction, and decreased population and is typically characterized emotional responsiveness. Additional features of by frequent episodes that include mania, schizophrenia include delusions, hallucinations, hypomania, major depression, and mixed and difficulties in maintaining long-term episodes. Bipolar I disorder usually involves relationships. Although little is known about the a manic/mixed episode, whereas bipolar II genetics and molecular bases, genetic studies have must involve a major depressive episode and shown that schizophrenia and bipolar disorder hypomanic episode, with no requirement for share a number of the same genes related to the risk of disease (21). Thus, identifying genetic Figure 3: Distribution of mutations associated with psychiatric symptoms. WFS1 mutations associated
factors provides a guide to potential mechanisms
with mood disorder were categorized into two groups:
of action.
mutations identified in Wolfram Syndrome patients and
Study Aim
mutations identified in heterozygous carriers of WFS1 mutations.
In this report, we examined the relationship
between
reported
pathogenic
mutations in WFS1 and psychiatric disorders. We propose that mutations in WFS1 predict
6
2021-2022 Syndrome. Published papers that ranged from small patient studies to in depth genomic analyses were gathered. The literature was mined for relevant patient data and identification of mutations in WFS1. In addition, the references of each paper were examined for any other relevant papers. We excluded any study that does not address the full protein sequence of WFS1. However, the paucity of studies that examined mutations in the N-terminus of WFS1 highlights that mutations in the first 310 residues of the protein are underrepresented. Data synthesis through in-silico evaluation software: In order to select the relevant Figure 4: the SNAP2 predicted effect of mutations in WFS1 in with the SNAP2 predicted accuracy for each mutation’s impact. The closer to 100 a particular mutation is, the greater impact it has on wolframin structure and function.
mutations, the WFS1 amino acid sequence was run through SNAP2 (screening for nonacceptable
Note how the pattern for predicted effect and percent accuracy mirror each other.
polymorphisms),
PolyPhen-2
(Polymorphism Phenotyping v2), and PROVEAN (Protein Variation Effect Analyzer), all of which are software that predict the functional effects of sequence variants using statistical methods (22, 23). It is difficult to characterize a certain psychiatric symptom as a definite indicator of a particular disorder. Thus, our investigation of mutations in the gene WFS1 incorporated data that include psychiatric symptoms associated with bipolar disorder and schizophrenia, even if those patients were not formally diagnosed with one of the disorders. To take into consideration lack of diagnosis and misdiagnosis, all patients with the following symptoms were considered: suicide tendency, suicide, depression, major Figure 5: The impact of WFS1 mutations in protein structuree and function based on SNAP2, PolyPhen-2, and PROVEAN data (data points were normalized to highest value in each data set).
an increased risk of bipolar disorder and regarding Wolfram Syndrome and heterozygous schizophrenia. We also note that there are carriers of WFS1 mutations with psychiatric virtually no published studies examining disorders (Figure 1). Databases searched included mutations in the N-terminus of WFS1 which PubMed Central, MEDLINE, Google Scholar, encodes for the primary region of wolframin and Bookshelf. Within all databases, the search residing in the cytoplasmic compartment terms “Wolfram Syndrome and Mood Disorders,” of cells and represents over 20% of the “N-terminus mutations in WFS1,” and “WFS1 protein. Combining results from all these mutations” AND [bipolar disorder, mood disorder, studies will assist in the understanding of the depression, or psychiatric disease] were used. pathophysiology of both Wolfram Syndrome and Papers (ranging from 1998-2020) were selected psychiatric disorders.
after reading the abstract and determining relevancy to the objective. The aim was to
Methods:
determine if particular WFS1 mutations found in
Searching strategy and study selection:
Wolfram Syndrome patients were associated with
Comprehensive literature searches psychiatric symptoms regardless of whether the and analyses were done to compile available data patient exhibited classic symptoms of Wolfram
7
depressive disorder, schizophrenia, bipolar disorder, manic episodes, hallucinations, and general psychiatric illness. As little is known about the cellular and neurological function of either wolframin or WFS1, there is not an abundance of data surrounding its connection to psychiatric disorders, especially as psychiatric disorders are not a defining characteristic of the disease (1). In total, approximately 2,392 patients were included in these collective studies. Statistical analysis: Fisher’s Exact Tests were performed to investigate: i) the correlation between mutation location and the predicted PolyPhen-2 score and ii) the correlation between mutation location and psychiatric disorders. A P-value lower than 0.05 was considered statistically significant, and correlation indices such as
Scientia Cramer’s V and Contigency Coefficient were computed. In order to illustrate the correlation of psychiatric phenotypes with the different locations, we categorized the psychiatric disorders into 5 main groups: i. Aggression, hallucinations, general psychiatric illness and psychiatric problems ii. Depression, depression with therapy and major depression iii. Manic episodes and bipolar disorder iv. Schizophrenia v. Suicide Results: The first round of literature search yielded over one hundred possible WFS1 mutations that were associated with mood
Figure 6: The potential progression of mood disorder ina given patient due ot mutations in wolframin.
disorder. In order to refine this list, SNAP2
confirm the location of mutational hotspots in Syndrome but had psychiatric symptoms (34). The
was used to determine the predicted effect and
the protein. From the present information, we degree of alteration in protein structure appears
accuracy on the protein structure and amino
identified regions of interest which included to correlate with the impact on functions related
acid sequence (UniProtKB - O76024 [WFS1_
mutations that had multiple reports in the to Wolfram Syndrome. The mutations to WFS1,
HUMAN]). As the experimental validation of the
C-terminus (residues 672-717 and 771-776) and at especially those to W700, should be examined
wolframin structure is not yet established, it was
the interface between the membrane and the ER further for effects on wolframin structure that
necessary to utilize this molecular prediction to
lumen (A326, L432, P533, G576).
identify the likely location of the mutations on the protein. Wolframin
We then sought to determine which events. mutations found in our search were associated
is
a
lead to both medical and psychiatric downstream We then aligned the magnitude of
multi-pass
with Wolfram Syndrome patients and which every mutation’s impact along the protein (Figure
transmembrane protein associated with the
mutations were associated with heterozygous 5). It is important to note that there are no data
endoplasmic reticulum (ER) (17, 18, 27), where the
carriers of WFS1 mutations. A Venn diagram regarding the N-terminal mutations in WFS1 and
N-terminus is cytoplasmic and the C-terminus
was generated in order to visualize the overlap mood disorder, thus our analysis of mutations
resides in the lumen of the ER. The identified
(Figure 3). Note that two mutations in wolframin begins after the N-terminus, and the X axis starts
mutations were highlighted on the proposed
(A559T and A684V) were present in both Wolfram at residue position 300. The mutations which
folding structure of wolframin (Figure 2). This
Syndrome and heterozygous carriers of WFS1 were detected across all three platforms to be
location and orientation are appropriate for a
mutations in multiple cases. A559T is associated particularly impactful (in order from most to
protein that regulates calcium signaling (18).
with manic episodes and major depression (16, least impactful) were W700C, P553S, and R558C.
This mutation map demonstrates the many
28, 29), and A684V is associated with depression W700C was given a PROVEAN of -12.937, which is
reported C-terminal mutations, but lack of
and hallucinations (30-32) in both populations.
known mutations in the N-terminus. The
Subsequently, the SNAP2 predicted effect (-7.923 and -7.134, respectfully). Note that P533S
absence of published reports on mutations in
values were plotted in comparison to the and R558C mutations have only been detected in
the N-terminus was unexpected. Although the
SNAP2 predicted accuracy values (Figure 4). heterozygous carriers of WFS1 mutations. Thus,
mutations associated with Wolfram Syndrome
The SNAP2 results were most accurate when these mutations (P533S and R558C) may be points
appear to span the entire protein, the most
considering mutations with extreme impact on of interest for psychiatric disease because of their
frequently identified mutations associated with
protein structure and function. Patients with location in the middle of the protein, not the N-
psychiatric symptoms are A559T and A684V,
mutations at W700 have severe manifestations or C- termini (Table 1). This central location may
both of which are predicted to be localized in
of Wolfram Syndrome because the mutation allow wolframin to function relatively normally
extra-membrane regions of the protein. Several
W700X causes truncation of the majority of and cause solely psychiatric symptoms as opposed
mutations in non-Wolfram Syndrome patients
the C-terminus (10). Also, patients with the to physical symptoms like those associated with
(R772C, E717K, and M312R) occurred four unique
mutation W700C have been found to have Wolfram Syndrome patients.
times in different data sets, suggesting that
severe mood disorder with the mutation (9,
these are important positions for the function
33). The psychiatric symptoms associated with 4 mutations occurred in the cytoplasm, 17 in the
of wolframin. When a defined structure for
W700X were not reported. Patients with M312 ER lumen, and 7 in the membrane. We found a
wolframin is available, it will be possible to
mutations had milder symptoms of Wolfram statistically significant correlation between the
notably larger than the ratings of P533S and R558C
Over 29 mutations, we observed that
mutation location and the predicted PolyPhen-2
8
2021-2022 score (Cramer’s V = 0.40, Contigency The analysis did not show a statistically Coefficient = 0.49, P-value in Fisher’s significant
correlation
between
a
Exact Test = 0.02). The data showed certain psychiatric disorders group and that 82.4% (14/17) of the ER lumen mutation location (Cramer’s V = 0.29, mutations and 85.7% (6/7) of the Contigency Coefficient = 0.38, p-value membrane mutations are predicted as reported by the Fisher’s Exact Test = “probably damaging” according to Poly- 0.77). The majority of the mutations, Phen whereas 60% (3/4) of cytoplasmic indeed, occurred in the ER lumen, mutations are predicted to be “benign” regardless of the psychiatric disorders (Table 2). This finding suggests that if a groups. In patients with schizophrenia mutation occurs in the cytoplasm it is there are two mutations in cytoplasm, 4 more likely to be benign; conversely if in the ER lumen and 2 in the membrane. the mutation occurs in the lumen or in In patients with manic episodes and the membrane, then it is more likely to bipolar disorders one cytoplasmic and be damaging.
2 ER lumen mutations were reported (Table 3).
Table 2: Relationship between mutation locations and PolyPhen-2 predicted effect
Table 3: Distribution of the mutations associated to the psychiatric disorder groups across different locations
Table 1: Mutations in wolframin listed with their associated symptoms, SNAP2 predicted effect score/ SNAP2 predicted percent accuracy, PolyPhen-2 rating, and PROVEAN rating/ PROVEAN numerical score.
Discussion and Conclusion: Wolfram Syndrome is a rare multisystem disease characterized by juvenile onset diabetes mellitus, vision and hearing loss, and psychiatric disorders. There is no definitive diagnostic tool nor disease-modifying tool for Wolfram Syndrome-related mood disorders. Presently, there is little known about the protein wolframin and gene WFS1. Similarly, a coherent molecular or genetic understanding of mood disorders is still needed. The goal of this literature analysis was to determine whether there are hotspots in wolframin that could link mutations in the protein associated with Wolfram Syndrome to mood disorders such as bipolar disorder and schizophrenia. Relevant to this work, there is a growing interest in the field of genetic mutations related to psychiatric diseases. For example, evidence suggests the existence of mutations that are causative to autism spectrum disorder (35), Tourette’s Syndrome (36), attention-deficit/hyperactivity disorder (37), and Huntington’s Disease (38). The correlation we observed between WFS1 mutations and psychiatric symptoms is consistent with these previous findings in other diseases. Our findings support the proposal that specific mutations in WFS1 are associated with mood related disorders in both Wolfram Syndrome patients and heterozygous carriers of WFS1 mutations. When the location of these mutations is considered (Table 1), there is evidence that there are hot spots even though mutations were found throughout the protein.
9
Studies that have examined the N-terminal region of WFS1 have indicated that this region includes many “loss of function” mutations (1, 3). These mutations are often truncations or frameshifts which completely alter the remainder of the protein and are associated with the most detrimental forms of Wolfram Syndrome (1). More information describing the consequences of these N-terminus mutations is needed. We expect that there is a high incidence of mood disorders in individuals who carry mutations in this region, in both Wolfram Syndrome and heterozygous carriers of WFS1 mutations. Mutations in heterozygous carriers of WFS1 such as R772C, E717K, and M312R, occurred four unique times in different data sets throughout this search, which suggests that they are important positions. A next step is to perform mutagenesis of wolframin in cell and animal models of Wolfram Syndrome to assess how the mutations affect mRNA and protein stability in vitro and in vivo. R772C and E717K are both in the C-terminus, which is associated with severe Wolfram Syndrome and psychiatric illness. It ise important to learn if these residues are localized near W700 in the 3D folded structure of wolfram, another
Scientia
residue associated with severe disease. In contrast, M312R is closer to disorder, patients are typically seen when their disease has progressed to an the N-terminus on a transmembrane loop predicted to be close to the unmanageable point. Although Wolfram Syndrome is usually detected early, cell cytoplasm. Interestingly, this location at the interface between the disease progresses quickly, and leaves little time to reverse the damage membrane and cytoplasm may be relevant as other mutations associated at the cellular level. As mood disorders are complex, management may need with psychiatric symptoms were found there (A559T, E394V and R558C). to be personally tailored, and thus there is a demand for a targetable and In addition, the mutation R558C has been found to cause a mild form druggable pathway for these conditions. Further research on the pathways of Wolfram Syndrome and is associated with risk for type 2 diabetes in and mutations underlying Wolfram Syndrome, particularly the N-terminus the Ashkenazi Jewish population (39). This group of individuals provides of WFS1, is crucial to provide early diagnoses and effective therapeutics. In conclusion, WFS1 mutations have shown impactful change in
a controlled group to study the effects of the low impact mutation both
physically and psychologically. Once the wolframin structure is known, the structure of wolframin, leading to impaired calcium signaling and cell interactions among these sites will be determined. Future efforts and survival (18). These changes are expected to result in mood related disorders experiments will extend these findings and assist our understanding about in Wolfram Syndrome and heterozygous carriers of WFS1 mutations (Figure 6). Understanding the effect of WFS1 mutations on psychiatric disease is an
Wolfram Syndrome and its related psychiatric symptoms.
The findings of this report should be interpreted considering important challenge that will aid to development of targeted treatments for several limitations. Most importantly, knowledge of N-terminus mutations both Wolfram Syndrome and mood disorders. in Wolfram Syndrome patients is still limited and the availability of literature discussing this specific topic is sparse. In addition, information Abbreviations: about heterozygous carriers of WFS1 mutations is also under reported. DIDMOAD (diabetes insipidus, insulin-deficient diabetes mellitus, optic These limitations establish significant obstacles to find and select relevant atrophy and deafness) studies to substantiate our findings. Therefore, we formulated our search ER (endoplasmic reticulum) with a focus on schizophrenia and bipolar disease, as opposed to generally searching for every term associated with mental illness. We consider this report as an exploratory study intended to lay the groundwork for a more comprehensive research study in the future, which could References: hopefully include further information regarding psychiatric symptoms and N-terminal WFS1 mutations. In addition, with a debilitating disease such as Wolfram Syndrome, there is a chance that some of the psychiatric disorders identified in patients were an effect of living with a complex and incurable disease and not caused directly by the gene mutated in Wolfram Syndrome. Although we completed the review with these ambiguities in mind, understanding the distinction between cause and effect of mood disorders in particular is an area of research which needs further study. Even though it is hypothesized that the location of WFS1 mutations would correlate with psychiatric disorders, the results of our statistical analysis failed to confirm this hypothesis. There are several explanations for these results. For example, the wide spectrum of psychiatric symptoms reported in Wolfram Syndrome would require larger sample sizes and more evident phenotypes to adequately test for a correlation. Furthermore, there is variation in both the prevalence and the clinical assessment of psychiatric symptoms in different regions the world. Additionally, psychiatric manifestations are known to be influenced by environmental factors. When we examined Poly-Phen 2 predictive scores, we found that most of membrane and ER lumen mutations are damaging. As ER function is intimately related to the DNA damage response, and given the accumulating data supporting the hypothesis that ER and membranal wolframin mutations significantly induce psychiatric illness, we suggest that altered calcium homeostasis due to decreased NCS1 protein abundance is a contributing factor for the impaired cell signaling leading to abnormal neuronal function. Current treatments for both Wolfram Syndrome and mood disorders are limited. Often, the treatments are centered around symptom management as opposed to addressing the underlying mechanism responsible for the disease. In the case of Wolfram Syndrome related-mood
1. Urano F. Wolfram Syndrome: Diagnosis, Management, and Treatment. Current diabetes reports. 2016;16(1):6-. 2. Maleki N, Bashardoust B, Zakeri A, Salehifar A, Tavosi Z. Diabetes mellitus, diabetes insipidus, optic atrophy, and deafness: A case of Wolfram (DIDMOAD) syndrome. J Curr Ophthalmol. 2015;27(3-4):132-5. 3. Rohayem J, Ehlers C, Wiedemann B, Holl R, Oexle K, Kordonouri O, et al. Diabetes and neurodegeneration in Wolfram syndrome: a multicenter study of phenotype and genotype. Diabetes Care. 2011;34(7):1503-10. 4. Barrett TG, Bundey SE, Macleod AF. Neurodegeneration and diabetes: UK nationwide study of Wolfram (DIDMOAD) syndrome. Lancet (London, England). 1995;346(8988):1458-63. 5. Swift RG, Polymeropoulos MH, Torres R, Swift M. Predisposition of Wolfram syndrome heterozygotes to psychiatric illness. Mol Psychiatry. 1998;3(1):86-91. 6. Schmidt-Kastner R, Kreczmanski P, Preising M, Diederen R, Schmitz C, Reis D, et al. Expression of the diabetes risk gene wolframin (WFS1) in the human retina. Exp Eye Res. 2009;89(4):568-74. 7. Bischoff AN, Reiersen AM, Buttlaire A, Al-lozi A, Doty T, Marshall BA, et al. Selective cognitive and psychiatric manifestations in Wolfram Syndrome. Orphanet Journal of Rare Diseases. 2015;10(1):66. 8. Pallotta MT, Tascini G, Crispoldi R, Orabona C, Mondanelli G, Grohmann U, et al. Wolfram syndrome, a rare neurodegenerative disease: from pathogenesis to future treatment perspectives. J Transl Med. 2019;17(1):238-. 9. Hofmann S, Philbrook C, Gerbitz KD, Bauer MF. Wolfram syndrome: structural and functional analyses of mutant and wild-type wolframin, the WFS1 gene product. Hum Mol Genet. 2003;12(16):2003-12. 10. Hofmann S, Bauer MF. Wolfram syndrome-associated mutations lead to instability and proteasomal degradation of wolframin. FEBS Letters. 2006;580(16):4000-4. 11. Kakiuchi C, Ishigaki S, Oslowski CM, Fonseca SG, Kato T, Urano F. Valproate, a Mood Stabilizer, Induces WFS1 Expression and Modulates Its Interaction with ER Stress Protein GRP94. PLOS ONE. 2009;4(1):e4134. 12. Abreu D, Asada R, Revilla JMP, Lavagnino Z, Kries K, Piston DW, et al. Wolfram syndrome 1 gene regulates pathways maintaining beta-cell health and survival. Lab Invest. 2020;100(6):849-62. 13. Swift RG, Polymeropoulos MH, Torres R, Swift M. Predisposition of Wolfram syndrome heterozygotes to psychiatric illness. Molecular Psychiatry. 1998;3(1):86-91. 14. Sequeira A, Kim C, Seguin M, Lesage A, Chawky N, Desautels A, et al. Wolfram syndrome and suicide: Evidence for a role of WFS1 in suicidal and impulsive behavior. Am J Med Genet B Neuropsychiatr Genet. 2003;119b(1):108-13. 15. Koido K, Kõks S, Nikopensius T, Maron E, Altmäe S, Heinaste E, et al. Polymorphisms in wolframin (WFS1) gene are possibly related to increased risk
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2021-2022 for mood disorders. The international journal of neuropsychopharmacology / official scientific journal of the Collegium Internationale Neuropsychopharmacologicum (CINP). 2005;8:235-44. 16. Swift M, Swift RG. Wolframin mutations and hospitalization for psychiatric illness. Mol Psychiatry. 2005;10(8):799-803. 17. Angebault C, Fauconnier J, Patergnani S, Rieusset J, Danese A, Affortit CA, et al. ER-mitochondria cross-talk is regulated by the Ca(2+) sensor NCS1 and is impaired in Wolfram syndrome. Sci Signal. 2018;11(553). 18. Nguyen L, Fischer TT, Abreu D, Arroyo A, Urano F, Ehrlich BE. Calpain Inhibitor and Ibudilast Rescue β-Cell Function in a Cellular Model of Wolfram Syndrome. PNAS. 2020;117(29):17389-98. 19. Charney AW, Ruderfer DM, Stahl EA, Moran JL, Chambert K, Belliveau RA, et al. Evidence for genetic heterogeneity between clinical subtypes of bipolar disorder. Transl Psychiatry. 2017;7(1):e993. 20. Rowland TA, Marwaha S. Epidemiology and risk factors for bipolar disorder. Ther Adv Psychopharmacol. 2018;8(9):251-69. 21. Smeland OB, Bahrami S, Frei O, Shadrin A, O’Connell K, Savage J, et al. Genome-wide analysis reveals extensive genetic overlap between schizophrenia, bipolar disorder, and intelligence. Mol Psychiatry. 2020;25(4):844-53. 22. Adzhubei I, Jordan DM, Sunyaev SR. Predicting functional effect of human missense mutations using PolyPhen-2. Curr Protoc Hum Genet. 2013;Chapter 7:Unit7 20. 23. Choi Y, Sims GE, Murphy S, Miller JR, Chan AP. Predicting the functional effect of amino acid substitutions and indels. PLoS One. 2012;7(10):e46688. 24. Bromberg Y, Rost B. SNAP: predict effect of non-synonymous polymorphisms on function. Nucleic Acids Research. 2007;35(11):3823-35. 25. Saleh MA, Solayman M, Paul S, Saha M, Khalil MI, Gan SH. Impacts of Nonsynonymous Single Nucleotide Polymorphisms of Adiponectin Receptor 1 Gene on Corresponding Protein Stability: A Computational Approach. Biomed Res Int. 2016;2016:9142190. 26. Roy A, Kucukural A, Zhang Y. I-TASSER: a unified platform for automated protein structure and function prediction. Nat Protoc. 2010;5(4):72538. 27. Philbrook C, Fritz E, Weiher H. Expressional and functional studies of Wolframin, the gene function deficient in Wolfram syndrome, in mice and patient cells. Exp Gerontol. 2005;40(8-9):671-8. 28. Khanim F, Kirk J, Latif F, Barrett TG. WFS1/wolframin mutations, Wolfram syndrome, and associated diseases. Hum Mutat. 2001;17(5):357-67. 29. Smith CJ, Crock PA, King BR, Meldrum CJ, Scott RJ. Phenotype-genotype correlations in a series of wolfram syndrome families. Diabetes Care. 2004;27(8):2003-9. 30. Cryns K, Sivakumaran TA, Van den Ouweland JM, Pennings RJ, Cremers CW, Flothmann K, et al. Mutational spectrum of the WFS1 gene in Wolfram syndrome, nonsyndromic hearing impairment, diabetes mellitus, and psychiatric disease. Hum Mutat. 2003;22(4):275-87. 31. Kobayashi M, Miyagawa M, Nishio SY, Moteki H, Fujikawa T, Ohyama K, et al. WFS1 mutation screening in a large series of Japanese hearing loss patients: Massively parallel DNA sequencing-based analysis. PLoS One. 2018;13(3):e0193359. 32. Rendtorff N, Lodahl M, Boulahbel H, Johansen I, Pandya A, Welch K, et al. Identification of p.A684V Missense Mutation in the WFS1 Gene as a Frequent Cause of Autosomal Dominant Optic Atrophy and Hearing Impairment. American journal of medical genetics Part A. 2011;155A:1298-313. 33. Qian X, Qin L, Xing G, Cao X. Phenotype Prediction of Pathogenic Nonsynonymous Single Nucleotide Polymorphisms in WFS1. Sci Rep. 2015;5:14731. 34. Hansen L, Eiberg H, Barrett T, Bek T, Kjaersgaard P, Tranebjaerg L, et al. Mutation analysis of the WFS1 gene in seven Danish Wolfram syndrome families; four new mutations identified. Eur J Hum Genet. 2005;13(12):1275-84. 35. De Rubeis S, He X, Goldberg AP, Poultney CS, Samocha K, Cicek AE, et al. Synaptic, transcriptional and chromatin genes disrupted in autism. Nature. 2014;515(7526):209-15. 36. Pauls DL, Leckman JF, Cohen DJ. Familial relationship between Gilles de la Tourette’s syndrome, attention deficit disorder, learning disabilities, speech disorders, and stuttering. J Am Acad Child Adolesc Psychiatry. 1993;32(5):1044-50. 37. Thapar A. Discoveries on the Genetics of ADHD in the 21st Century: New Findings and Their Implications. Am J Psychiatry. 2018;175(10):943-50. 38. McColgan P, Tabrizi SJ. Huntington’s disease: a clinical review. Eur J Neurol. 2018;25(1):24-34. 39. Bansal V, Boehm BO, Darvasi A. Identification of a missense variant in the WFS1 gene that causes a mild form of Wolfram syndrome and is associated with risk for type 2 diabetes in Ashkenazi Jewish individuals. Diabetologia. 2018;61(10):2180-8. 40. Fischer TT, Nguyen LD, Ehrlich BE. Neuronal Calcium Sensor 1 (NCS1) as a Potential Drug Target for Treatment of Wolfram Syndrome. The FASEB Journal. 2020;34(S1):1-.
41. Koh PO, Undie AS, Kabbani N, Levenson R, Goldman-Rakic PS, Lidow MS. Up-regulation of neuronal calcium sensor-1 (NCS-1) in the prefrontal cortex of schizophrenic and bipolar patients. Proc Natl Acad Sci U S A. 2003;100(1):313-7. 42. Won E, Kim YK. An Oldie but Goodie: Lithium in the Treatment of Bipolar Disorder through Neuroprotective and Neurotrophic Mechanisms. Int J Mol Sci. 2017;18(12). 43. Matsunaga K, Tanabe K, Inoue H, Okuya S, Ohta Y, Akiyama M, et al. Wolfram syndrome in the Japanese population; molecular analysis of WFS1 gene and characterization of clinical features. PLoS One. 2014;9(9):e106906.
11
Scientia
Activation of Host Kinase Vps34 by Murine Norovirus Non-structural Protein NS4 Introduction:
IN-DEPTH Jessica Oros Randall Lab, University of Chicago
that other viruses such as dengue virus (DENV),
Despite Vps34 being used in the host
and encephalomyocarditis virus (EMCV) cannot
for autophagy, MNV may be utilizing Vps34
Each year, millions of individuals
replicate when the TAG-dependent antiviral
to aid the process of viral replication. Thus,
are infected with human norovirus, securing
pathway is knocked down. If the TAG-dependent
we hypothesize that Vps34 may be a point of
norovirus as the number one worldwide cause
antiviral pathway was the only means through
control by MNV during infection as it may
of gastroenteritis and causing about 200,000
which viral replication was controlled, DENV
support viral replication in an unknown way.
deaths each year. Tens of thousands of those
and EMCV would be able to replicate in TAG-
Furthermore, we aim to characterize which
deaths occurring in children in developing
knockout conditions. Since this is not observed,
viral non-structural protein is responsible for
countries. There are presently no norovirus
it indicates that there is some other TAG-
the change in Vps34 activation level. Out of the
vaccines or cures, making it a pressing issue to
independent antiviral pathway present that is
6 non-structural proteins of MNV, the most
understand the biology of norovirus infection.
still blocking viral replication. Interestingly,
likely candidates are NS4, NS5, and NS6 because
Unfortunately, human norovirus cannot be
MNV can still replicate in this TAG-deficient
of their previously elucidated roles in immune
easily grown in laboratory cultures. However,
model, meaning there is some mechanism by
evasion. NS4 has been shown to localize to host
murine norovirus (MNV) can serve as a model.
which MNV is evading the immune response.
intracellular membranes and thus may play a
MNV is used in the lab to understand the
Evasion may be possible at the viral replication
role in replication complex formation, but its
mechanisms behind infection in murine cell
stage via the replication complex or through
function is largely uncharacterized. The Randall
lines. MNV is a positive-sense RNA virus. Like
virus-derived factors such as interactions
Lab has previously shown that NS5 can produce
other viruses within the same class, MNV creates
between viral and host proteins. The aim of this
an immune evasion phenotype upon infection
a replication complex upon entry and uncoating
project is to elucidate the mechanisms by which
with DEMV and EMCV of BV2 cells transduced
inside the cell using host-cell membranes . The
MNV presents a phenotype of immune evasion
with NS5. Upon entry and uncoating, the viral
purpose of this replication complex seems to be
through interactions with host proteins.
genome is translated into a polyprotein, and
protecting viral genome replication from the
One possible player in MNV immune
NS6 is the protease responsible for the cleavage
hostile environment of the host cell cytoplasm.
evasion and replication could be the cellular class
and release of individual MNV non-structural
Luckily for host organisms, these replication
III phosphatidylinositol-3 kinase (PI3K) vacuolar
proteins .
complexes can be targetted via an interferon-
protein sorting 34 (Vps34), which plays a role in
In this study, we have shown that
gamma (IFNG) mediated antiviral pathway,
cellular trafficking via initiation of autophagy.
infection with MNV results in a decrease in
allowing for lysosomal degradation of the
Vps34
phosphatidylinositol
inhibitory Vps34 acetylation, indicating an
replicating virus. This pathway uses proteins
to produce phosphatidylinositol-3-phosphate
increase in activity. Out of the viral non-
involved in autophagy, a cellular process by
(PI3P), which acts as a membrane marker to
structural proteins tested, only non-structural
which foreign particles or faulty proteins are
begin the formation of the autophagosome
protein 4 (NS4) was able to reproduce the
engulfed and degraded through lysosomal
. In healthy cells, Vps34 is maintained in an
phenotype, indicating that it is responsible for
fusion. This recognition by the host cell is done
inhibitory state by the nutrient-sensing kinase
the release of Vps34 from its inhibitory state.
by the Atg12-Atg5-Atg16L1 complex, which is
mTOR. Under cellular stress or starvation, mTOR
comprised of autophagy-related (Atg) proteins
phosphorylates UVRAG, a protein complex
Materials and Methods:
that interact with host membranes to form an
involved in endocytosis, which will activate
Tissue Culture:
autophagosome . Conjugation of the ubiquitin-
Vps34 to initiate autophagy. The Randall lab
Murine norovirus (MNV) was used as
like microtubule associated protein light-chain
has previously shown that knockdown of Vps34
a model to study norovirus activity. Cell culture
3 (LC3) with Atg-5 allows interferon-inducible
prevents MNV replication, indicating that there
was done with murine microglial BV2 cells using
GTPases to localize to LC3
phosphorylates
and target the
may be interactions between the virus and
standard tissue culture protocol, which involves
replication complex, inhibiting viral replication
the host lipid kinase. Vps34 activity is tightly
growing the adherent cells in flasks with Gibco
. This pathway does not operate via degradative
regulated by the host cell through acetylation
Dulbecco’s Modified Eagle Medium (DMEM)
canonical autophagy, but it uses autophagy
by the acetyltransferase p300, which itself
supplemented with 10% fetal bovine serum
proteins to prevent MNV from replicating inside
is activated by autoacetylation . Acetylation
(FBS) and 1% each of non-essential amino acids,
the cell . The pathway is called the Targeting by
of Vps34 is inhibitory, and activation by
hydroxyethyl
AutophaGy protein (TAG) – dependent antiviral
deacetylation contributes to the formation of
(HEPES), and PIS. Cells were seeded and used for
pathway. Prior work in the Randall lab shows
autophagosomes.
experiments. In the case of interferon gamma
12
piperazineethanesulfonic
acid
2021-2022 (IFNG) treatment, 100µL/mL were used for a 24hour period. For infections, MNV strain CW3 was diluted in complete DMEM media and added to cells at 0.05 MOI. Transductions: Transductions of viral non-structural proteins or wild-type Vps34 were done using plasmids previously generated by the Randall lab. Third-generation lentiviral constructs were used, and transfection was prepared for HEK293T cells using CaCl2, HEPES buffered saline solution, sterilized water, lentivirus packaging plasmids, pseudotyping envelope plasmids, and the previously described plasmids containing V5-
Figure 1: MNV Infection decreases levels of acetylp-300 and acetyl Vps-34 Western blots of control BV2 and control BV2+wtVps34 alongside infected BV2 and infected BV2+wtVps34. Infection was done with 0.05 MOI of MNV for 24 hours. (A) Infected cell lysates are shown in lane 2. Acetylp-300 and p300 bands were flanked by two
tagged Vps34 or Flag-tagged MNV non-structural
unspecific bands on the top and bottom. (B) Immunoprecipitations of cell lysates captured Vps34, with the middle column showing
proteins NS4, NS5, or NS6, with the tags being used
infected lysates. Input Vps34 and actin bands are taken from input samples collected from supernatant of lysates with precipitated
for immunoprecipitation and immunoblotting. Supernatant was collected and filtered to isolate lentivirus particles 48 hours post transfection, which were added to BV2 cells. Selection for successfully transduced BV2 cells was done with Thermo Fisher Scientific Hygromycin B at a concentration of 250µg/mL. Gel Electrophoresis and Transfer: After 24 hours post infection (hpi) or post seeding cells transduced with MNV nonstructural proteins, cells were lysed using 2x Laemmli sample buffer. Samples were then heated at 95ºC for 10 minutes before gel electrophoresis was done on an SDS-PAGE to separate samples by size alongside Thermo Fisher Scientific PageRuler 10-250 kDa. Protein samples were transferred from the SDS-PAGE gel to 0.2μm PVDF membranes via semi-dry transfer. Membranes were then blocked in 5% skim milk blocking buffer before immunoblotting
with
polyclonal
antibodies
targeting the desired proteins. Immunoprecipitation: In the case of immunoprecipitation, after 24hpi, cells were treated with cold coimmunoprecipitation lysis buffer was used and comprised 2.5mL 1M Tris at pH 7.5, 1.5mL 5M NaCl, 5mL 10% Triton X-100, proteinase inhibitor cocktail, and 41mL distilled water. Lysed cells were briefly frozen at -80ºC and thawed to complete lysis. Cell lysates were incubated overnight at 4ºC on a rotator with Cytiva Protein A Sepharose beads and mouse anti-V5 antibody. Precipitated protein was washed using Co-IP wash buffer before 2x Laemmli sample buffer was added, and samples were heated at 95ºC for 10 minutes before an SDS-PAGE and semi-dry transfer was done following the same protocol as whole cell lysates described above.
Vps34
Antibodies:
this phenotype. This indicates that MNV the
infection results in a decrease of acetylation
immunoprecipitation of Vps34 were Cell Signaling
Antibodies
for
of the acetyltransferase p300 such that the
Technology Mouse V5-tag (E9H80). Detection
levels of active p300 are at a lower level. Levels
of Vps34 and acetyl-Vps34 via immunoblot was
of acetylated Vps34 were measured (Figure 1b)
done with Cell Signaling Technology Rabbit
after infection using an immunoprecipitation,
V5-tag (D3H80) and Cell Signaling Technology
as endogenous levels of Vps34 are below
Rabbit Acetylated-Lysine, respectively. Imaging
detection threshold. When compared to
p300 in whole cell lysate was done with Santa
BV2 cells transduced with wild-type Vps34
Cruz Biotechnology Mouse monoclonal IgG p300
(BV2+wtVps34), infected cells showed a marked
(F-4), while acetyl-p300 was captured with Cell
decrease in the levels of acetylated Vps34.
Signaling Technology Rabbit Acetyl-CBP (K1535)/
Levels of Vps34 were consistent across infected
p300 (K1499). To normalize Western blot bands,
and control cells, meaning the decrease in
actin was detected in each sample using Santa
acetyl-Vps34 is notable.
Cruz Biotechnology Mouse monoclonal IgG Beta-
MNV NS4 decreases expression of acetyl-
actin (C4) HRP. Detection of viral non-structural
Vps34
proteins was done with Sigma-Aldrich Rabbit
BV2+wtVps34 cells were transduced
polyclonal Anti-FLAG antibodies. Secondary
using lentivirus with NS4, NS5, or NS6, and an
antibodies used were Thermo Fischer Scientific
immunoprecipitation was run on cell lysates
goat anti-Rabbit IgG secondary antibody, HRP
to precipitate Vps34. Immunoprecipitation
and Thermo Fischer Scientific goat anti-Mouse
products were subject to gel electrophoresis
IgG secondary antibody, HRP.
and immunoblotting to detect levels of Vps34 and acetyl-Vps34. Immunoblotting was done
Results:
to detect the presence of the transduced viral
MNV Infection decreases levels of acetyl-p300
non-structural protein and endogenous actin
and acetyl-Vps34
for normalizing measurements. Additionally,
BV2 cells were infected with MNV at a
input lanes were included to ensure the efficacy
multiplicity of infection (MOI) of 0.05 for 24 hours,
of the immunoprecipitation. Transduction
after which cells were lysed and the lysate was run
with NS6 did not replicate the major decrease
on an SDS-PAGE gel. Western blots using anti-
in acetyl-Vps34 levels (Figure 2a). However,
acetyl-CBP rabbit polyclonal antibodies and anti-
due to problems with either transfer or
CBP mouse polyclonal antibodies were used to
immunoblotting, repeated instances of noise
detect levels of acetyl-p300 and p300, respectively
on the membrane obstructed any detailed view
(Figure 1a). Cells infected with MNV showed a
of the acetyl-Vps34 bands. Transductions with
decrease in the fraction of p300 acetylated, as
NS5 were performed and the level of Vps34
control cells showed a greater increase from p300
and acetyl-Vps34 were measured without
to acetyl-p300 while infected cells did not mirror
obstruction from noise. NS5 transduction
13
Scientia resulted in a minor increase in the levels of Vps34 (Figure 2b), but as compared to the BV2+wtVps34 control, the ratio of acetyl-Vps34 to Vps34 was lower, indicating that NS5 is not responsible for the release of Vps34 from its acetylated inhibitory state. NS4 was transduced into BV2+wtVps34 cells, and a decrease in the level of acetyl-Vps34 was observed (Figure 2c). Because problems with the gel in the case of NS6 resulted in obstruction of acetyl-Vps34 bands, densitometry data was measured and graphed comparing levels of acetylVps34 in NS4 and NS5 transduced cells (Figure 2d). As seen in Figure 2b, an increase in acetyl-Vps34 was present in NS5 transduced cells, but NS4 transduced cells showed a decrease in expression of acetyl-Vps34 when compared to BV2+Vps34 cells without viral protein. This indicates that MNV protein NS4 is responsible for the decrease in Vps34 acetylation observed in infection. MNV NS4 decreases p300 acetylation Cells were transduced with NS4 and NS6, and lysates were run through gel electrophoresis and levels of p300 and acetyl-p300 were detected via immunoblot. NS4 transduction resulted in a notable decrease in not only acetyl-p300 levels, but overall p300 expression as well Figure 2: MNVNS5 and NS6 do not produce dramatic decrease in acetyl-Vps34, NS4 decreases acetyl-Vps34 levels Western blots of control BV2 and control BV2-wtVps34 alongside BV2 cells transduced with NS6 (A), NS5 (B), and NS4 (C)
(Figure 3a). NS6, however, did not show a change in the
are shown with immunoblotting for Vps34 and acetyl-Vps34. Viral proteins were imaged using rabbit anti-Flag antibodies
acetyl-p300 levels as compared to BV2 controls (Figure
to indicate transduction was successful. Input lanes were included to ensure the efficacy of immunoprecipitation.
3b), indicating that NS6 cannot reproduce the phenotype
Densinometry calculations for expression levels of acetyl-Vps34 were done using data fron NS4-transduced and NS5transduced cells (D).
observed in MNV infection. When compared, it is evident that expression levels of p300 are much lower during NS4
Figure 3: MNV NS4 decreases
transduction than NS6 transduction (Figure 3c). These
acetyl-p300 levels while NS6 does not
results further point to NS4 as being responsible for the
Western blots of control BV2 cells and
phenotype in MNV infection whereby acetylation levels of
BV2 cells transduced with NS4 (A) and NS6 (B) are shown with immunoblotting for p300 and acetyl-p300. Densinometry calculations for expression level of acetyl-Vps34 were done (C).
p300 and Vps34 are decreased. Role of NS4 interaction with Vps34 is not IFNG-dependent To test whether the deacetylation of Vps34 plays a role in viral immune evasion in the presence of interferon gamma (IFNG), cells transduced with NS4 were treated with IFNG at a concentration of 100µL/mL. Immunoprecipitated Vps34 was immunoblotted via Western blot and levels of Vps34 and acetyl-Vps34 were captured (Figure 4). The levels of both Vps34 and acetyl-Vps34 are constant across samples from NS4-transduced BV2 cells incubated with and without IFNG. This indicates there was no noticeable change in the acetylation state of Vps34 during IFNG treatment. Because IFNG does not alter Vps34 activation in NS4 conditions, NS4 does not appear to play a role in the IFNG antiviral pathway and may instead be involved in viral replication. Discussion: The mechanism of MNV replication and immune evasion are not fully characterized, as it is relatively
Figure 4: Acetyl-Vps34 levels do not change in NS4 cells treated with IFNG Western blots of control BV2+wtVps34 cells and NS4-transduced cells in response to treatment with IFNG (2uL/mL). Input Vps34 shown for success of immunoprecipitation and NS4 shown for success of transduction.
unknown what purposes many non-structural proteins serve upon entry and uncoating. We have shown that activation of the lipid kinase Vps34 is increased during MNV infection through a release of inhibition on Vps34. Furthermore, it was shown that the levels of the active
14
2021-2022 upstream regulator of Vps34, acetyltransferase p300, decreased during infection. These results suggest that Vps34 does play a role in viral replication and therefore is a point of control in MNV infection. These results were replicated in cells transduced with MNV non-structural protein NS4, while the large decrease in acetylation levels of Vps34 and p300 was not observed in NS5 or NS6 transduced cells. This indicates that, during MNV infection, the phenotype wherein p300 expresses decreased activation and Vps34 expressess increased activation is being brought on by NS4. It is also notable that the interaction between NS4 and Vps34 is not affected by the presence of IFNG. Had there been changes in Vps34 activation in the presence of NS4 and IFNG treatment, it may have led to the belief that Vps34 aids MNV in evading antiviral pathways, as IFNG is responsible for the detection and disruption of the viral replication complex. Instead, it is likely that Vps34 may be involved with aiding viral replication. The Randall lab will perform additional trials of the experiments described in this paper to verify the data and evaluate its statistical significance. It is still unknown exactly what NS4 does in the host cell upon infection. Studies have found it to localize to the Golgi apparatus and endosomesix, leading to a tentative belief that it may be involved in recruiting host membranes for the formation of the viral replication complex. Downstream effects of Vps34 will be studied to further understand how Vps34 creates a pro-viral state within the cell for viral replication. Upon autophagosome initiation, Vps34 functions to produce phosphatidylinositol-3-phosphate
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(PI3P) at the source of autophagosome membranes . To test whether Vps34 is functioning to form the viral replication
Acknowledgements:
complex during infection, immunofluorescence assays
University of Chicago
are currently underway to see the localization of PI3P in
Randall Lab
response to MNV infection. Large amounts of colocalization
Biological Sciences Collegiate Division (BSCD) Summer
of PI3P with sites of autophagosome membrane sources
Fellowship Program
during infection would indicate that MNV is utilizing the host cell’s autophagy pathway for the construction of the viral replication complex. Additionally, the mechanisms by which Vps34 is aiding viral replication remain unknown. Further work will be done to understand differences in activity of upstream regulators of Vps34 during MNV infection and NS4 transduction, as it is unclear how NS4 is decreasing levels of Vps34 acetylation. It is unlikely that NS4 functions directly as a deacetylase, so the pathway by which Vps34 is deacetylated indirectly during NS4 transduction is yet to be elucidated. Further progress will examine other regulators of Vps34 that install post-translational modifications other than acetylation, such as phosphorylation or ubiquitination.
15
Scientia
IN-DEPTH
Long-lasting Effects of Early Life Stress on the Brain and Epigenome Omar Kassem Abstract Stable caregiving in early life is critical for normal social and emotional development. Exposure to chronic or extreme stress early in life has been associated with increased risk for psychiatric disorders, especially affective disorders. Early life stress (ELS) has long-lasting impacts on the development and function of diverse brain regions that are involved in emotional processing, cognitive functions, and social behavior. Despite the adverse effects of ELS on brain development, the neural underpinnings of those effects are not yet well characterized. This review highlights ELS-provoked changes in networks wiring, the cellular impacts on neuron excitability and myelination, and the epigenetic modifications that contribute to those changes. Understanding those neurobiological aberrations aids in understanding the increased risk for psychopathology that has been reported in children exposed to ELS and provides insights into potential Introduction
have revealed that ELS can provoke changes conducted on adolescents years after exposure
Brain development and maturation on various levels including changes in neuron but the impact of ELS was still significant. Further are modulated by an interaction between excitability
and
myelination,
rewiring
of studies in mice have provided more insight into
environmental inputs and genes. It is well networks, and epigenetic modifications that are the underlying neural changes in those regions established that exposure to stress at different in some cases transgenerational [2,9,10,11]. Thus, in response to stress. The main physiological ages leads to different outcomes, with early stages integrating findings from circuitry, cellular, and model of memory formation in the brain is of development being associated with more severe genetic studies is essential to fully understand through adjusting synaptic weights in networks and long-lasting effects [1]. Early childhood is this
process.
Understanding
the
neural to encode memories. Several studies have
a critical period of brain development, which underpinnings of the relationship between ELS demonstrated that ELS interferes with synaptic renders it highly vulnerable to disorganizing and the mental health of the victims is of great plasticity and induces dendritic as well as spine environmental influences. Sustained or adverse value in the pursuit of possible treatments and atrophy [13,16,17]. The cumulative effect of these early-life stress (ELS), such as childhood trauma or interventions. Moreover, a better understanding alterations causes the loss of functional synapses, caregiver deprivation, modifies the expression of of caregiver-related stress effects on child which contributes to cognitive deficits. These multiple neurotransmitters and other molecules development provides many useful insights for influences on neural networks are mediated by that affect neuron and network development improving orphanage systems.
multiple molecules including stress-associated
in specific brain regions, potentially causing
glucocorticoid hormones, neurotransmitters,
long-term structural and functional changes [2]. Impact of ELS through disruption of the and neuropeptides. Better characterization of Brain regions involved in emotional processing, maturation of brain networks and circuitry such as the amygdala, cognitive regions such as
the stress toolbox has enhanced our ability to
The long-term effects of ELS stem pharmacologically intervene and manage stress
the hippocampus and prefrontal cortex, as well from the fact that developmental processes that symptoms [18,19]. as networks involved in social behaviors seem organize circuits and connectivity patterns are
Similarly, ELS, especially in the form
to be particularly responsive and vulnerable still occurring. In humans, the development of of caregiver deprivation, has been shown to to the impact of stress [1,3,4,5,6]. ELS-induced the hippocampus and limbic circuit, which are affect the development of the amygdala, which is long-lasting changes in these regions would be involved in cognitive and emotional functions, highly involved in emotion processing, affective expected to increase susceptibility to emotional takes place largely shortly after birth and valuation, and learning [20]. One key study did disorders and psychiatric illnesses, which has continues for years into adolescence. Therefore, an fMRI scan of brain activity of children adopted been reported in many epidemiological human unlike the effects of stress on adult cognitive from orphanages in a behavioral paradigm where studies [7,8]. Although the associations that functions that are reversible, ELS can often they were instructed to “go” to a neutral cue, and were statistically inferred from epidemiological permanently impact these processes and systems, “not go” to a rare threat cue [3]. Results showed studies are highly indicative of the impact of ELS, yet behavioral and pharmacological interventions that ELS-exposed preadolescents took longer it is difficult to prove causality and elucidate the can still be effective [12,13,14].. An epidemiological to approach a cue when anticipating a potential biological mechanisms underlying this influence study
conducted
on
post-institutionalized threat, indicating that the disorganized care of
in humans. Therefore, many subsequent studies adolescents showed that chronic early life the orphanage experience can alter emotional have used animal models to investigate the stress, being raised in orphanages, is associated and behavioral regulation. FMRI data showed biological underpinnings of ELS consequences. with a reduced volume of prefrontal cortex and that only activity in the amygdala differentiated Studies in animal models, especially rodents, hippocampus [15]. Remarkably, this study was the ELS-exposed children from the control group
16
2021-2022 when anticipating an aversive stimulus. These findings help explain the
adversity expedites their maturation.
epidemiological association between the institutional rearing of children
ELS effects on the epigenome
and psychiatric disorders, especially internalizing ones such as anxiety and
Epigenetics refers to the regulation of gene expression without
disruptive disorders [21,22]. Moreover, these results gesture towards the
altering the genetic code itself. This change in regulation is achieved by
critical importance of providing stable caregiver affection in orphanages,
changing the 3D structure of chromatin. By making the DNA more tightly
and families, to ensure the healthy mental development of children.
or loosely packed, epigenetic machinery can regulate the accessibility
ELS neuron-level effects
of the genome, thus, regulating the expression of genes. Epigenetic
Many studies have attempted to understand the neuron-
modifications involve adding a chemical modification to the DNA or
level impacts of ELS that mediate the observed cortical activity changes
histone proteins, which the DNA is wrapped around, to change its chemical
and behavioral phenotype. The two main influences that have been
properties and 3D shape in the cell. These modifications are added by a
characterized are changes in the electrical properties and myelination of
writer protein and removed by an eraser. The study of epigenetic changes
neurons [23,24,25]. One study used adolescent social isolation of rats to
in the nervous system, called Neuroepigenetics, has provided a lot of
investigate the electrical properties of basolateral amygdala pyramidal
insight into the mechanisms of gene regulation in neurons, especially
cells. This study revealed that the stressed group showed a significant
during development.
increase in neuron excitability, meaning that neurons were more easily
One key study by Kronman et al found that early-life stress in mice
and frequently firing, in comparison to control rats. This effect was
induces epigenetic changes, dimethylation of lysine 79 of histone H3
mediated by a decrease in SK potassium channel activity. Using a drug to
(H3K79me2), in D2-type medium spiny neurons in the depression-
enhance SK channel activity to normalize neuron excitability was found
associated region nucleus accumbens, renders mice more vulnerable
to attenuate anxiety-related behaviors, which provides insights into the
to stress later in life [11]. When ELS-exposed mice faced a second stress
potential of pharmacological interventions that could elevate symptoms.
event in adulthood they exhibited more depression-like behaviors than
Another study by Tanti et al [27] attempted to investigate the
control mice, including lower social interaction, decreased exploration,
effect of altered brain activity of the brain during early development,
and greater immobility in a swim test. They then used a viral vector to
and how that could induce long-term changes similar to those observed
genetically interfere with the function of the writer (Dot1l) and eraser
in children that face early childhood adversity. This study showed that
(Kdm2b) enzymes of the implicated epigenetic modification. Inducing
pharmacological reduction of the activity of the prefrontal cortex of
increased modification through overexpression of Dot1lor knockdown of
mice during development reproduces the cellular and behavioral defects
Kdm2b induced depression-like behaviors in control mice, in other words
induced by repeated ELS: increased behaviors associated with anxiety
inducing an ELS-like phenotype. Conversely, knocking down Dot1l or
and depression, a persistent decrease in neuronal activity, and early
overexpressing Kdm2b reversed the depression-like behaviors in response
differentiation of oligodendrocyte precursors (OPCs), cells that will be
to stress, showing that interventions on an epigenetic level could be a
responsible for producing the myelin surrounding neurons. Conversely,
potential therapeutic approach to remedy the long term effects of ELS.
restoring normal neuronal activity in the prefrontal cortex in mice
Although the effects of ELS could be reversed with genetic manipulation
undergoing early maternal separation leads to the disappearance of
in mice, such an intervention is not very practical in humans. Drugs that
short-term memory deficits, behavioral alterations associated with the
inhibit protein functions are much more feasible for human applications.
depressive state, and oligodendrocyte development. However, behavioral
The authors tested the effect of using a drug that inhibits Dotl1 enzyme to
disorders associated with anxiety persisted. This difference in effect on
interfere with ELS disruptions. Treated mice showed reduced modification
anxiety disorders and depressive disorders could be due to a spatial bias of
levels in their genome and improved behavioral performance, social
the viral injection they used to modulate activity, as it could have modified
interaction scores. These results provided important insights into the
activity in only a subset of emotional circuits involved. Furthermore, the
potential of using epigenetic drugs to remedy disruptions in the brain and
pharmacogenetic technique used to modulate neuronal activity does not
reverse some of those long-lasting effects.
reproduce the physiological state of developing neural networks. These Conclusion and future directions
differences could contribute to the persistence of anxiety behaviors. The same study revealed that ELS is associated with changes in myelination
Overall, these studies demonstrate that early life stress has
and oligodendrocyte maturation. ELS induces premature differentiation of
profound effects on the developing brain including disrupting critical
oligodendrocyte precursors into mature oligodendrocytes. These results
networks, disrupted electrical properties, and myelination of neurons.
suggest that early emotional stress could lead to expedited maturation
These effects are at least partly mediated by epigenetic modifications that
in brain regions associated with emotion processing, which comes with
change the 3D shape of DNA, thus regulating gene expression in neurons.
a short-term advantage, that being processing the immediate emotional
These ELS effects are often long-lasting and increase susceptibility to
disturbances, and a long-term deficit. The decrease in OPCs could lead
mental and psychiatric disorders, which has been repeatedly shown
to a decrease in quantity and plasticity of myelination later in life. This
to be a significant influence on institutionally reared children. A better
falls in line with human studies associating institutionalized rearing with
understanding of the biological underpinnings of ELS disruptions has
a decline in white matter volume [26], which is related to the volume of
provided significant insights into prospective therapeutic approaches
the fatty myelin layer surrounding axons. Additionally, early maturation
that could reverse those long-lasting effects, such as epigenetic and
of OPCs has been reported in young adults who were sexually assaulted
pharmacological intervention. Moreover, studies on early-life caregiver
in childhood [27], which further supports the hypothesis that early life
deprivation and social isolation emphasize the importance of providing a
17
stable and consistent social environment for children at a young age, which should be incorporated into institutional rearing organizations. There are many future research directions that would provide a more comprehensive understanding of this phenomenon and provide insights into minimizing its impact on children. Elucidating the nature and underlying biology of sex-specific consequences of early-life stress is one important question that has been posed by epidemiological studies that show higher prevalence in females. Many behavioral cognitive therapies have been shown to promote rectifying changes in the brain, the potential of such treatments for reversing the ELS-induced biological and neurological changes is also one issue that hasn’t been studied. Also, many epigenetic studies have revealed that some epigenetic modifications could be transgenerational, potentially making future generations more vulnerable to disruptions that parents experienced. The question of whether epigenetic changes that happen in response to early life adversity could be inherited is another interesting perspective that could have implications for parents with a history of ELS. Finally, the studies discussed here provide evidence for the accelerated maturation of emotion circuitry following ELS. Whether this altered developmental pattern comes at the cost of lagged development of other systems is still unknown and is of great importance for improving the lives of individuals with histories of ELS.
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